PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462894244 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | LSD | ||||||||
Protein Properties | Length: 254aa MW: 26846 Da PI: 8.9199 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 38 | 2.7e-12 | 86 | 110 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCrt+L YP GApsV+Ca+C+++ 462894244 86 CRGCRTVLLYPQGAPSVCCAVCQAI 110 9**********************97 PP | |||||||
2 | zf-LSD1 | 41.7 | 1.9e-13 | 125 | 149 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+r+A VRC++C+tV 462894244 125 CGGCRTLLMYTRNADTVRCSCCHTV 149 ************************9 PP | |||||||
3 | zf-LSD1 | 47.4 | 3.2e-15 | 163 | 186 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+C+t+L+YP+GApsV+Ca+C+ 462894244 163 CGQCGTTLMYPYGAPSVKCAICNY 186 **********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 1.8E-11 | 83 | 113 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.7E-10 | 86 | 110 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 3.3E-15 | 122 | 152 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 4.5E-11 | 125 | 149 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 2.4E-10 | 160 | 188 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 4.6E-14 | 163 | 187 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
LCALKSLKRA APPRRRNPIP NQLLLASPET RETEKSTPRS LDPSATLARR LRLPHRVDLF 60 PSEPPEPETG GLSRPTSAGM QSQIVCRGCR TVLLYPQGAP SVCCAVCQAI TTVPPPGLEM 120 AQLICGGCRT LLMYTRNADT VRCSCCHTVN LVRPVNNVAH VNCGQCGTTL MYPYGAPSVK 180 CAICNYITTT GINTVAASSS ATPASNGSSY SVSSTSAPKP QPPNVTVVVE NPMTVDEKGK 240 LVSNVVVGVT TGRN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462894244 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004982348.1 | 1e-103 | protein LOL3 | ||||
Swissprot | Q6ASS2 | 1e-92 | LOL3_ORYSJ; Protein LOL3 | ||||
TrEMBL | K4AE78 | 1e-105 | K4AE78_SETIT; Uncharacterized protein | ||||
STRING | Si037185m | 1e-106 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1347 | 38 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.1 | 7e-55 | lsd one like 1 |
Publications ? help Back to Top | |||
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