PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462894193

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

NF-YC

Protein Properties

Length: 323aa MW: 35816 Da PI: 6.522

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462894193	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	52.4	1.2e-16	45	119	24	98
NF-YC 24 arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 rikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t+ s +++++ +++dfl ++v + 462894193 45 PRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYDITIRKGAKTVSSSHLKQCIHTYNVYDFLREVVSK 119 59********************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00808	5.2E-16	46	104	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	8.7E-22	46	105	IPR009072	Histone-fold
SuperFamily	SSF47113	1.16E-18	51	121	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MRKKLDTRFP ANRFSFMHVR NFGCLMIGGY AVDLSSRSVE NPGTPRIKKI MQADEDVGKI 60 ALAVPVLVSK ALELFLQDLC DRTYDITIRK GAKTVSSSHL KQCIHTYNVY DFLREVVSKV 120 PDMGTADANA DDKFGKRKAA EEGSEEELKR TRNESERHTS NGRGRGRGRG RGRRGGRGSW 180 REFSTTHEKS NDQFSKPADL KLEVSDATEG EGTPMSSGRA CLRNFDLNLD PADEDVEVAV 240 PLQTQSTAST TSLSTVTGPS VHQLNEGATT AKPSAPRSIE GPKLKDFLGW QLPDMTKMTM 300 DPIHFALTSN HTLEDDEDYD NEE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	4e-16	46	104	16	74	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	162	171	RGRGRGRGRG
2	162	172	RGRGRGRGRGR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462894193

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004961645.1	1e-116	dr1-associated corepressor isoform X1
TrEMBL	A0A0A9G083	1e-120	A0A0A9G083_ARUDO; Uncharacterized protein
STRING	Si022720m	1e-114	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2172	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	8e-45	nuclear factor Y, subunit C11