PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462893686
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family G2-like
Protein Properties Length: 369aa    MW: 41029 Da    PI: 7.2496
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462893686genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.53.1e-33195248255
    G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 r+rWtpeLHe+Fveav+ LGGsekAtPk+i ++mkvkgLt++hvkSHLQkYR 
  462893686 195 LRMRWTPELHEQFVEAVNMLGGSEKATPKAIQKVMKVKGLTIYHVKSHLQKYRA 248
                69***************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.948191251IPR017930Myb domain
SuperFamilySSF466891.25E-18191250IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.4E-30193249IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-24194248IPR006447Myb domain, plants
PfamPF002493.0E-11196247IPR001005SANT/Myb domain
PfamPF143791.5E-15283325IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
YVESELPCSA SLPALQSACT LPSNFTSSDL RTYNESQSPY GKLSSGSYAT EQFDPDTLLP  60
SAYPAFKGNS STLRTILPKE SERVSWNQEP LQGVFDSPTS VYFSNQQNVN PVGKRIHDSI  120
TMALNAQLAE RHEIFSSGGS MEFLGSAGSV LKAVDARSLT PENYSYCQVQ SSVPPFNSDE  180
VSHDNLPSNT TPTKLRMRWT PELHEQFVEA VNMLGGSEKA TPKAIQKVMK VKGLTIYHVK  240
SHLQKYRAVQ HRPESSDAGT PAKRGSLSDE VPFQQSKCLK NVEGLRTQIG LQKQLYEQLE  300
IQRKLQLQVE EHSKYLEMII AQQSESLKKL GALPGSQDRP HPALDNNKAC EERTRCTNSA  360
TEKMNDQKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-26194252260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-26194252260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-26194252260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-26194252260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-26194252260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-26194252260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-26194252260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-26194252260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462893686
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812072.11e-123protein PHOSPHATE STARVATION RESPONSE 1-like isoform X1
RefseqXP_025812080.11e-123protein PHOSPHATE STARVATION RESPONSE 1-like isoform X1
RefseqXP_025812087.11e-123protein PHOSPHATE STARVATION RESPONSE 1-like isoform X1
RefseqXP_025812095.11e-123protein PHOSPHATE STARVATION RESPONSE 1-like isoform X1
TrEMBLA0A0A9MIF31e-174A0A0A9MIF3_ARUDO; Uncharacterized protein
STRINGOB02G43730.11e-118(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54942526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28610.11e-48phosphate starvation response 1