PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462893665
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 266aa    MW: 29732.5 Da    PI: 9.1967
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462893665genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.63.1e-50101351128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kge 98 
                lppGfrF P+deelv++yL++kv++       v+ evd++++ePw+Lp  +k +++ewyfFs rd+kyatg r+nratksgyWkatgkd+ +++   +++
  462893665  10 LPPGFRFYPSDEELVCHYLHNKVANAG----GVMVEVDLHTHEPWELPDVAKLSTNEWYFFSFRDRKYATGLRTNRATKSGYWKATGKDRVIHNPkaGRA 105
                79**********************998....5789*************87788999*************************************9877788 PP

        NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                +vg++ktLvfy+grap+g kt+Wvmhe+r+
  462893665 106 VVGMRKTLVFYRGRAPNGIKTSWVMHEFRM 135
                8***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-597154IPR003441NAC domain
PROSITE profilePS5100557.38810154IPR003441NAC domain
PfamPF023653.6E-2811135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MGLRDIELTL PPGFRFYPSD EELVCHYLHN KVANAGGVMV EVDLHTHEPW ELPDVAKLST  60
NEWYFFSFRD RKYATGLRTN RATKSGYWKA TGKDRVIHNP KAGRAVVGMR KTLVFYRGRA  120
PNGIKTSWVM HEFRMENLHT PPKEDWVLCR VFYKKKADAL DYSMDNEIAM AHSAAASGKY  180
SSSSSDPGYS PPFPGLGSTH HYHQLPPSSD HHGGAGPLND FPAMALLQHN SIFDFHAHHQ  240
PLDGGSVMAG GGRRRETAAA AGRSWN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-4711594169NO APICAL MERISTEM PROTEIN
1ut4_B2e-4711594169NO APICAL MERISTEM PROTEIN
1ut7_A2e-4711594169NO APICAL MERISTEM PROTEIN
1ut7_B2e-4711594169NO APICAL MERISTEM PROTEIN
3swm_A2e-4711597172NAC domain-containing protein 19
3swm_B2e-4711597172NAC domain-containing protein 19
3swm_C2e-4711597172NAC domain-containing protein 19
3swm_D2e-4711597172NAC domain-containing protein 19
3swp_A2e-4711597172NAC domain-containing protein 19
3swp_B2e-4711597172NAC domain-containing protein 19
3swp_C2e-4711597172NAC domain-containing protein 19
3swp_D2e-4711597172NAC domain-containing protein 19
4dul_A2e-4711594169NAC domain-containing protein 19
4dul_B2e-4711594169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462893665
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0609761e-106AK060976.1 Oryza sativa Japonica Group cDNA clone:006-202-E09, full insert sequence.
GenBankAK0709821e-106AK070982.1 Oryza sativa Japonica Group cDNA clone:J023075A01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824302.11e-142protein CUP-SHAPED COTYLEDON 3-like
SwissprotQ9FLJ23e-61NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A2S3GUT51e-141A0A2S3GUT5_9POAL; Uncharacterized protein
STRINGSi017967m1e-138(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69738166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.13e-79NAC domain containing protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]