PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462893644 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MYB | ||||||||
Protein Properties | Length: 224aa MW: 25268.5 Da PI: 9.1352 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.3 | 6.3e-17 | 96 | 140 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT Ed +l v+++G ++Wk I ++++ gR +kqc++rw++yl 462893644 96 SWTRVEDNILRSMVERYGEHNWKMIEQHLP-GRIGKQCRDRWNNYL 140 7*****************************.**************7 PP | |||||||
2 | Myb_DNA-binding | 61.1 | 2.3e-19 | 150 | 190 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT++Ed+ l++a++++Gg++W++Iar+++ gR+++ +k++w+ 462893644 150 WTEDEDKMLIEAHRRYGGNRWSKIARHLP-GRSENAIKNHWN 190 *****************************.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.124 | 89 | 140 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-14 | 93 | 142 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.95E-29 | 95 | 189 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-21 | 95 | 143 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.38E-15 | 96 | 140 | No hit | No description |
Pfam | PF00249 | 2.1E-15 | 96 | 140 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 23.93 | 141 | 197 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-21 | 144 | 194 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.0E-17 | 146 | 195 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.92E-17 | 150 | 193 | No hit | No description |
Pfam | PF00249 | 9.4E-17 | 150 | 190 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MAMEYLGSSG HGVTHFQNSM APVSVQASED QLTSVPVDAS SLVPRIGMTP TEFEMPDGAL 60 GVTGFDVVGG VPGEAMIAWQ PQNGSYGKPP APLETSWTRV EDNILRSMVE RYGEHNWKMI 120 EQHLPGRIGK QCRDRWNNYL RPGIKKNDFW TEDEDKMLIE AHRRYGGNRW SKIARHLPGR 180 SENAIKNHWN ATLRSLKTKR RPNNNMRANT QSTCAACAWL TTYL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 9e-34 | 97 | 194 | 7 | 102 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 1e-33 | 90 | 194 | 54 | 156 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-33 | 90 | 194 | 54 | 156 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 8e-34 | 97 | 194 | 7 | 102 | C-Myb DNA-Binding Domain |
1msf_C | 8e-34 | 97 | 194 | 7 | 102 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462893644 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004972257.1 | 8e-72 | transcription factor MYB80 | ||||
TrEMBL | A0A3L6SKL5 | 2e-71 | A0A3L6SKL5_PANMI; Uncharacterized protein | ||||
STRING | Si004755m | 3e-71 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1882 | 33 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 6e-37 | myb domain protein 98 |