PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462893256

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

NF-YC

Protein Properties

Length: 246aa MW: 27427.8 Da PI: 4.2818

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462893256	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	155.5	9.2e-49	85	188	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 ql+ w+ q ie+ tdfk+h+lPlarikki+kadedvkmi+ eaPv+++kace+fileltlr+wl++e +krrtl++sd+ aa+t+td+fdflvdi+p 462893256 85 QLQPLWAGQmaeIEQITDFKQHSLPLARIKKIMKADEDVKMIAGEAPVVFAKACEMFILELTLRAWLQTEGTKRRTLQRSDVVAAITKTDMFDFLVDIIP 184 7899999887779*************************************************************************************** PP NF-YC 98 rdel 101 +el 462893256 185 PEEL 188 9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	6.04E-32	63	179	IPR009072	Histone-fold
Pfam	PF00808	2.7E-19	107	170	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.7E-34	108	184	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MEQPSPIKVN EGATNGDDPA AYATMTYQPV ALASVPPAEG AAFPPTSQGA STFQFNLETD 60 SEQHQTAFQQ AQQFYQQQQQ YQQEQLQPLW AGQMAEIEQI TDFKQHSLPL ARIKKIMKAD 120 EDVKMIAGEA PVVFAKACEM FILELTLRAW LQTEGTKRRT LQRSDVVAAI TKTDMFDFLV 180 DIIPPEELKG DNTVGTPPPT TVPSMVPSYI PGMTVSYETY ANQQHVSFMW PLPEHQQQTS 240 DGGRDD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	5e-48	93	184	3	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	157	163	RRTLQRS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269\|PubMed:26542958}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462893256

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269\|PubMed:26542958}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025822248.1	6e-67	nuclear transcription factor Y subunit C-2-like
Swissprot	Q655V5	3e-59	NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBL	A0A2T7D4J5	1e-66	A0A2T7D4J5_9POAL; Uncharacterized protein
STRING	Pavir.J34239.1.p	2e-59	(Panicum virgatum)
STRING	LPERR08G05650.1	3e-59	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15703	12	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	2e-54	nuclear factor Y, subunit C2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]