PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462893220
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 136aa    MW: 14889.6 Da    PI: 10.8135
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462893220genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.96.4e-202469147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEde l ++v+++G ++W++I+r ++ gR++k+c++rw + 
        462893220 24 KGPWSPEEDEALQRLVARHGARNWSLISRSIP-GRSGKSCRLRWCNQ 69
                     79******************************.***********985 PP
2Myb_DNA-binding56.65.8e-1878120347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+eEd+ +++a++++G++ W+tIar +  gRt++ +k++w++ 
        462893220  78 PFTPEEDDTILRAHAKFGNK-WATIARLLS-GRTDNAIKNHWNST 120
                      89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.5971974IPR017930Myb domain
SuperFamilySSF466892.59E-3321117IPR009057Homeodomain-like
SMARTSM007178.3E-172372IPR001005SANT/Myb domain
PfamPF002494.5E-192469IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-262577IPR009057Homeodomain-like
CDDcd001671.83E-152668No hitNo description
SMARTSM007174.9E-1575123IPR001005SANT/Myb domain
PROSITE profilePS5129421.03976125IPR017930Myb domain
CDDcd001671.02E-1178121No hitNo description
PfamPF002491.9E-1578120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2478124IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MASSSPSCRA SGGGSSNKDV DRIKGPWSPE EDEALQRLVA RHGARNWSLI SRSIPGRSGK  60
SCRLRWCNQL SPQVEHRPFT PEEDDTILRA HAKFGNKWAT IARLLSGRTD NAIKNHWNST  120
LKRKYYAASG ASGGGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-39211244107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00632PBMTransfer from PK28565.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462893220
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794251e-135HF679425.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB19 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151336.14e-81sucrose responsive element binding protein
SwissprotO231601e-63MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A3L6QSH96e-82A0A3L6QSH9_PANMI; Sucrose responsive element binding protein
STRINGPavir.Ba03084.1.p7e-81(Panicum virgatum)
STRINGGRMZM2G050550_P011e-80(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78938154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.15e-67myb domain protein 70
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]