PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462893163 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 208aa MW: 23831.2 Da PI: 8.7143 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.1 | 4.2e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien + rqvtfskRr+g++KKA+EL vLCda+v v++fsstg+ly++ss 462893163 9 KKIENMTSRQVTFSKRRTGLFKKAKELAVLCDAQVGVLVFSSTGRLYDFSS 59 68***********************************************96 PP | |||||||
2 | K-box | 57.3 | 6.9e-20 | 59 | 124 | 34 | 99 |
K-box 34 eqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + R+llG++L+ ++++++++Le+qLe sl +iR kK+e+++++i+el kke + e+n++Lr+k++ 462893163 59 STRRLLGQNLSGMDFEDIKSLENQLEMSLHNIRVKKDEFMINEIQELNKKETLMIEQNEELRHKFN 124 57*************************************************************986 PP | |||||||
3 | K-box | 14.9 | 1.1e-06 | 106 | 136 | 67 | 97 |
K-box 67 skKnellleqieelqkkekelqeenkaLrkk 97 +kK+ l++eq eel++k ++++een +Lrkk 462893163 106 NKKETLMIEQNEELRHKFNAIHEENINLRKK 136 59***************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.1E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.156 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.63E-33 | 3 | 60 | No hit | No description |
PRINTS | PR00404 | 1.1E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.16E-25 | 3 | 61 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.7E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 10.067 | 38 | 129 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 8.0E-18 | 59 | 123 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MVRGKTVMKK IENMTSRQVT FSKRRTGLFK KAKELAVLCD AQVGVLVFSS TGRLYDFSST 60 RRLLGQNLSG MDFEDIKSLE NQLEMSLHNI RVKKDEFMIN EIQELNKKET LMIEQNEELR 120 HKFNAIHEEN INLRKKGERS AQKSFATEYS ITSPAEDDDD HQVHLELSQP QHAAKGKPET 180 PTLSITNAIL VDNCVAPLVH DKRFRLTS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of flowering time in long-day photoperiod. Participates in the repression of FT expression and floral transition, by interacting closely with the FLC-SVP pathways (PubMed:24876250). Functions in the satellite meristemoid lineage of stomatal development (PubMed:17704216). {ECO:0000269|PubMed:17704216, ECO:0000269|PubMed:24876250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462893163 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the micro RNA miR824. {ECO:0000269|PubMed:18579782}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020165070.1 | 4e-62 | MADS-box transcription factor 23-like | ||||
Swissprot | A2RVQ5 | 1e-48 | AGL16_ARATH; Agamous-like MADS-box protein AGL16 | ||||
TrEMBL | A0A1E5VGQ1 | 1e-62 | A0A1E5VGQ1_9POAL; MADS-box transcription factor 27 | ||||
STRING | OPUNC06G13170.1 | 4e-62 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP614 | 35 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.2 | 3e-51 | AGAMOUS-like 16 |
Publications ? help Back to Top | |||
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