PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462893056
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 321aa    MW: 34286.3 Da    PI: 6.6333
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462893056genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM84.12.8e-2646120277
        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra 77 
                +pGfrFhPt+eel+ +yL++kvegk++++ + i+++d+y+++Pw+Lp+++  + kew+f+++rd+ky++g+r+nr+
  462893056  46 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-DLIADLDLYRFDPWELPAMAVMGGKEWFFYVPRDRKYRNGDRPNRS 120
                79***************************.99***************7767789*********************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100526.18645197IPR003441NAC domain
SuperFamilySSF1019411.24E-2845120IPR003441NAC domain
PfamPF023651.2E-1047117IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MSRDLEDGHG AAGSAAAAAG GAGRGGSEAS VGGGEAGDSH DNDLVMPGFR FHPTEEELIE  60
FYLRRKVEGK RFNVDLIADL DLYRFDPWEL PAMAVMGGKE WFFYVPRDRK YRNGDRPNRS  120
EISLCRVYKR SGIDDGHGQA SSSTSSGRRT SSRTGRNVSS PASTPLSPTQ HPSSFHLLLG  180
ECSPASAPAI MDQVVTAQNV PQLLPPPRPR AFVSSANSLP MIAPTEGAAI LAPTYSLLNM  240
TGAPRPGDEL STLVGHSQAY ANYLSATTGS YFLPPPMPQV PPLGAPPMAP PLASSVSDKL  300
NWNWNPVPDT TGKDYNTSSF K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-27471201790Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462893056
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0604784e-98BT060478.1 Zea mays full-length cDNA clone ZM_BFb0004F04 mRNA, complete cds.
GenBankHQ8587624e-98HQ858762.1 Zea mays clone UT1609 NAC transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020087980.11e-62NAC domain-containing protein 35-like
TrEMBLA0A0A9J8035e-66A0A0A9J803_ARUDO; Uncharacterized protein
STRINGPavir.J00477.1.p2e-60(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2957122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.15e-46NAC domain containing protein 35