PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462892842
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family LSD
Protein Properties Length: 153aa    MW: 15837.7 Da    PI: 7.8533
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462892842genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.51.1e-132751125
    zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
               C gCr+lL+YP+GA+sV+Ca+C tV
  462892842 27 CTGCRNLLMYPAGATSVCCAVCSTV 51
               9**********************99 PP

2zf-LSD146.75.2e-156690125
    zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
               CggC+tlL+Y rGA+sV+C++C+tV
  462892842 66 CGGCHTLLMYIRGATSVQCSCCHTV 90
               ************************9 PP

3zf-LSD141.81.8e-13114138125
    zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                Cg+Cr lL+Y +GA+sV+Ca+C++V
  462892842 114 CGNCRMLLMYQYGARSVKCAVCNFV 138
                ***********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010536.9E-132454IPR005735Zinc finger, LSD1-type
PfamPF069438.6E-112751IPR005735Zinc finger, LSD1-type
SuperFamilySSF486957.25E-527135IPR011031Multihaem cytochrome
TIGRFAMsTIGR010539.5E-156392IPR005735Zinc finger, LSD1-type
PfamPF069431.4E-126690IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010534.3E-12111141IPR005735Zinc finger, LSD1-type
PfamPF069431.1E-12114138IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MPVPLAPYPT PPVPFTPPNG AQSQLVCTGC RNLLMYPAGA TSVCCAVCST VTAVPAPGTE  60
MAQLVCGGCH TLLMYIRGAT SVQCSCCHTV NLAMEVGMIC VFCVPANQVA HVNCGNCRML  120
LMYQYGARSV KCAVCNFVTS VGASPGAEQK PSA
Functional Description ? help Back to Top
Source Description
UniProtNegative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462892842
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0916661e-104FP091666.1 Phyllostachys edulis cDNA clone: bphyst007l18, full insert sequence.
GenBankFP0942101e-104FP094210.1 Phyllostachys edulis cDNA clone: bphylf003c20, full insert sequence.
GenBankFP0971061e-104FP097106.1 Phyllostachys edulis cDNA clone: bphyst016n22, full insert sequence.
GenBankFP0978371e-104FP097837.1 Phyllostachys edulis cDNA clone: bphylf033i22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006847710.12e-84protein LSD1 isoform X1
RefseqXP_011624573.12e-84protein LSD1 isoform X1
SwissprotQ0J7V92e-83LSD1_ORYSJ; Protein LSD1
TrEMBLB5KLZ67e-86B5KLZ6_BAMOL; LOL1
STRINGERN092917e-84(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.38e-56lsd one like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]