PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462892842 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | LSD | ||||||||
Protein Properties | Length: 153aa MW: 15837.7 Da PI: 7.8533 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 42.5 | 1.1e-13 | 27 | 51 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCr+lL+YP+GA+sV+Ca+C tV 462892842 27 CTGCRNLLMYPAGATSVCCAVCSTV 51 9**********************99 PP | |||||||
2 | zf-LSD1 | 46.7 | 5.2e-15 | 66 | 90 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV 462892842 66 CGGCHTLLMYIRGATSVQCSCCHTV 90 ************************9 PP | |||||||
3 | zf-LSD1 | 41.8 | 1.8e-13 | 114 | 138 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V 462892842 114 CGNCRMLLMYQYGARSVKCAVCNFV 138 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 6.9E-13 | 24 | 54 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 8.6E-11 | 27 | 51 | IPR005735 | Zinc finger, LSD1-type |
SuperFamily | SSF48695 | 7.25E-5 | 27 | 135 | IPR011031 | Multihaem cytochrome |
TIGRFAMs | TIGR01053 | 9.5E-15 | 63 | 92 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.4E-12 | 66 | 90 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 4.3E-12 | 111 | 141 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.1E-12 | 114 | 138 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0034051 | Biological Process | negative regulation of plant-type hypersensitive response | ||||
GO:0045595 | Biological Process | regulation of cell differentiation |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MPVPLAPYPT PPVPFTPPNG AQSQLVCTGC RNLLMYPAGA TSVCCAVCST VTAVPAPGTE 60 MAQLVCGGCH TLLMYIRGAT SVQCSCCHTV NLAMEVGMIC VFCVPANQVA HVNCGNCRML 120 LMYQYGARSV KCAVCNFVTS VGASPGAEQK PSA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Negative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462892842 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP091666 | 1e-104 | FP091666.1 Phyllostachys edulis cDNA clone: bphyst007l18, full insert sequence. | |||
GenBank | FP094210 | 1e-104 | FP094210.1 Phyllostachys edulis cDNA clone: bphylf003c20, full insert sequence. | |||
GenBank | FP097106 | 1e-104 | FP097106.1 Phyllostachys edulis cDNA clone: bphyst016n22, full insert sequence. | |||
GenBank | FP097837 | 1e-104 | FP097837.1 Phyllostachys edulis cDNA clone: bphylf033i22, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006847710.1 | 2e-84 | protein LSD1 isoform X1 | ||||
Refseq | XP_011624573.1 | 2e-84 | protein LSD1 isoform X1 | ||||
Swissprot | Q0J7V9 | 2e-83 | LSD1_ORYSJ; Protein LSD1 | ||||
TrEMBL | B5KLZ6 | 7e-86 | B5KLZ6_BAMOL; LOL1 | ||||
STRING | ERN09291 | 7e-84 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1347 | 38 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 8e-56 | lsd one like 1 |
Publications ? help Back to Top | |||
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