PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462892695
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family CO-like
Protein Properties Length: 478aa    MW: 51679.6 Da    PI: 5.0222
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462892695genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.22.5e-0674115540
   zf-B_box   5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 
                 C+ +++++   +C+++   lC +C  + H+       Ht++
  462892695  74 QCDFCGDQRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRT 115
                7*****************************657888888876 PP

2zf-B_box21.26.1e-07117159541
   zf-B_box   5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 
                 C+++ ++++   C   ++ lC++C  ++H+       H++++
  462892695 117 LCDRCTSQPAMVRCLIENVSLCQNCDWNGHSAgseaaeHKRQT 159
                7*****************************6689999998876 PP

3CCT63.94.7e-22421464144
        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                R+ al+RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrFvk+ 
  462892695 421 RDSALTRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFVKAG 464
                899**************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.2E-1170117IPR000315B-box-type zinc finger
CDDcd000211.37E-675117No hitNo description
PROSITE profilePS501199.58475117IPR000315B-box-type zinc finger
PROSITE profilePS501198.631113160IPR000315B-box-type zinc finger
CDDcd000213.05E-4117160No hitNo description
SMARTSM003360.42118160IPR000315B-box-type zinc finger
PROSITE profilePS5101715.467421463IPR010402CCT domain
PfamPF062038.5E-17421463IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MPFFPFCGAR RLIPPPLWSL VLYATTSPEA PGLPGRAQGS AVAGEPAALR CRRDGGSEPP  60
PRWLSFLPAI MGAQCDFCGD QRSMVYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR  120
CTSQPAMVRC LIENVSLCQN CDWNGHSAGS EAAEHKRQTI NCYSGCPSSA ELSRLWSFVS  180
DIPNVAPEPN CEQGISMMSI SDSGVSNQDN AAGDNSLLDI ASATLISDLD NCNRVQSLEG  240
SSSGAGVNLL PNATDETAGP VDSTTPKVPY TADKDMFCKD TIYEDFCVDD VDLAFENYEE  300
LFGTSHIQTE QLFDDAGIDS YFEMKEAPGG NADEQQKLMQ PANSNAVSAD SGMSNPGAKG  360
DSSVCIPVRQ ARSSLSLSFS GLTGESSAGD HQDCVVSSVL LMGEPPWHPP GPEGSYAGGS  420
RDSALTRYKE KKKRRKFDKK IRYASRKARA DVRKRVKGRF VKAGEAYDYD PLCETRSY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1430434KKKRR
2430435KKKRRK
3431435KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMap462892695
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008658624.10.0uncharacterized protein LOC100282916 isoform X3
SwissprotQ9SSE51e-125COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A3L6DB960.0A0A3L6DB96_MAIZE; Zinc finger protein CONSTANS-LIKE 10
STRINGGRMZM2G013398_P040.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20793788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.14e-86B-box type zinc finger protein with CCT domain