PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462892695 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | CO-like | ||||||||
Protein Properties | Length: 478aa MW: 51679.6 Da PI: 5.0222 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19.2 | 2.5e-06 | 74 | 115 | 5 | 40 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 C+ +++++ +C+++ lC +C + H+ Ht++ 462892695 74 QCDFCGDQRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRT 115 7*****************************657888888876 PP | |||||||
2 | zf-B_box | 21.2 | 6.1e-07 | 117 | 159 | 5 | 41 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+++ ++++ C ++ lC++C ++H+ H++++ 462892695 117 LCDRCTSQPAMVRCLIENVSLCQNCDWNGHSAgseaaeHKRQT 159 7*****************************6689999998876 PP | |||||||
3 | CCT | 63.9 | 4.7e-22 | 421 | 464 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R+ al+RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrFvk+ 462892695 421 RDSALTRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFVKAG 464 899**************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.2E-11 | 70 | 117 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.37E-6 | 75 | 117 | No hit | No description |
PROSITE profile | PS50119 | 9.584 | 75 | 117 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.631 | 113 | 160 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.05E-4 | 117 | 160 | No hit | No description |
SMART | SM00336 | 0.42 | 118 | 160 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 15.467 | 421 | 463 | IPR010402 | CCT domain |
Pfam | PF06203 | 8.5E-17 | 421 | 463 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 478 aa Download sequence Send to blast |
MPFFPFCGAR RLIPPPLWSL VLYATTSPEA PGLPGRAQGS AVAGEPAALR CRRDGGSEPP 60 PRWLSFLPAI MGAQCDFCGD QRSMVYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR 120 CTSQPAMVRC LIENVSLCQN CDWNGHSAGS EAAEHKRQTI NCYSGCPSSA ELSRLWSFVS 180 DIPNVAPEPN CEQGISMMSI SDSGVSNQDN AAGDNSLLDI ASATLISDLD NCNRVQSLEG 240 SSSGAGVNLL PNATDETAGP VDSTTPKVPY TADKDMFCKD TIYEDFCVDD VDLAFENYEE 300 LFGTSHIQTE QLFDDAGIDS YFEMKEAPGG NADEQQKLMQ PANSNAVSAD SGMSNPGAKG 360 DSSVCIPVRQ ARSSLSLSFS GLTGESSAGD HQDCVVSSVL LMGEPPWHPP GPEGSYAGGS 420 RDSALTRYKE KKKRRKFDKK IRYASRKARA DVRKRVKGRF VKAGEAYDYD PLCETRSY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 430 | 434 | KKKRR |
2 | 430 | 435 | KKKRRK |
3 | 431 | 435 | KKRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462892695 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008658624.1 | 0.0 | uncharacterized protein LOC100282916 isoform X3 | ||||
Swissprot | Q9SSE5 | 1e-125 | COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | A0A3L6DB96 | 0.0 | A0A3L6DB96_MAIZE; Zinc finger protein CONSTANS-LIKE 10 | ||||
STRING | GRMZM2G013398_P04 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2079 | 37 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48250.1 | 4e-86 | B-box type zinc finger protein with CCT domain |