PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462892468 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | Trihelix | ||||||||
Protein Properties | Length: 370aa MW: 40667.1 Da PI: 8.3351 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 66.6 | 5.1e-21 | 1 | 69 | 17 | 87 |
trihelix 17 meerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 m+ ++r+++lk+plWe+vs+k+++ g++rs+k+C+ek+en+ k+yk++k+g+ +r ++ + +++f++lea 462892468 1 MDAAFREAALKGPLWEDVSRKLAAMGYKRSAKKCREKFENVDKYYKRTKDGRAGR--GDGKAYRFFSELEA 69 6889*************************************************97..66667******985 PP | |||||||
2 | trihelix | 93 | 2.9e-29 | 89 | 166 | 9 | 87 |
trihelix 9 aLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 ++i++r+e+e r++++ k+plWe++s+ mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpy++qlea 462892468 89 CMIQLRTELEARYQDSGPKGPLWEDISAGMRRLGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYYHQLEA 166 68************************************************************8.99***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd12203 | 2.00E-17 | 1 | 49 | No hit | No description |
Pfam | PF13837 | 2.9E-15 | 4 | 70 | No hit | No description |
Pfam | PF13837 | 3.0E-19 | 89 | 167 | No hit | No description |
CDD | cd12203 | 3.46E-25 | 91 | 145 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MDAAFREAAL KGPLWEDVSR KLAAMGYKRS AKKCREKFEN VDKYYKRTKD GRAGRGDGKA 60 YRFFSELEAL HGGLPWPWRR HRSSLSPPCM IQLRTELEAR YQDSGPKGPL WEDISAGMRR 120 LGYNRNAKRC KEKWENINKY FKKVKESNKK RPEDSKTCPY YHQLEALYRS KALASASSSS 180 PHPPPPRPAD TVLAAVPLSQ TPPQDVHKMN NGNGCANGGS SGGTQQGTNG GVAATCSFPV 240 DVAGGNGTPA KKQQEDIIMK ETPTMAEETP QPVSMNDSYS PQPVSMNDSY VNDRMDAGDS 300 DSMDDDDEDD FDDDVVGGGN SNKMQYEIQF QRQQQQSQSS VVRPNATAGA GSAGPGPATT 360 TGSFLTMVHH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462892468 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK357823 | 3e-93 | AK357823.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1062I19. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004986012.1 | 1e-86 | trihelix transcription factor GTL1 isoform X1 | ||||
Swissprot | Q39117 | 5e-40 | TGT2_ARATH; Trihelix transcription factor GT-2 | ||||
TrEMBL | A0A368SX12 | 2e-86 | A0A368SX12_SETIT; Uncharacterized protein | ||||
STRING | Si034382m | 5e-86 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP606 | 38 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 6e-44 | Trihelix family protein |