PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462892154 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | TCP | ||||||||
Protein Properties | Length: 213aa MW: 22964 Da PI: 10.603 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 38.2 | 5.1e-12 | 17 | 85 | 78 | 136 |
TCP 78 ssssasnsssg..........kaaksaakskksqksaasalnlakesrakarararertrekmriknkl 136 ++++++n+++g +a+k+a+ k+++k a+++ l+ke+rakar+rarert+ek+r+++++ 462892154 17 QQQQQQNKGNGcgvdgkkppaRARKAANAAKPPRKLANAHPVLDKETRAKARERARERTKEKHRMRWVK 85 3344443333488999999976677777999999999999**************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51370 | 11.593 | 61 | 78 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048831 | Biological Process | regulation of shoot system development |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MSLPALSEEL LGGGGDQQQQ QQNKGNGCGV DGKKPPARAR KAANAAKPPR KLANAHPVLD 60 KETRAKARER ARERTKEKHR MRWVKLASAI DVEAAAANMA RDRPSTTGHN LNHSPSVNMA 120 SAAAAELEER CSSTLNNGGR MQEVSMATEP SDMILAFGNG GGYGGGSNNF CQEQWELGGV 180 VLLPRTMGAR WSRLRQLITV LLNTGTSYLR TVF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that functions as a negative regulator of lateral branching, presumably through its expression in axillary buds (PubMed:12581309, PubMed:20547591). Involved in the fine tuning of shoot branching. May function as an integrator of multiple signaling pathways to regulate the development of axillary buds. Works partially downstream of strigolactones to inhibit bud outgrowth (PubMed:20547591). Binds to MADS57 to suppress the negative regulation of D14 by MADS57 and balance the expression of D14 for tillering (PubMed:23463009). {ECO:0000269|PubMed:12581309, ECO:0000269|PubMed:20547591, ECO:0000269|PubMed:23463009}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462892154 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC243260 | 1e-41 | AC243260.1 Panicum virgatum clone PV_ABa103-K10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004982035.1 | 3e-63 | transcription factor TEOSINTE BRANCHED 1 | ||||
Swissprot | Q8LN68 | 4e-47 | TB1_ORYSJ; Transcription factor TB1 | ||||
TrEMBL | A0A346M126 | 3e-69 | A0A346M126_CYNDA; Teosinte branched 1 | ||||
STRING | Si038692m | 1e-62 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7253 | 36 | 51 |