PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462892124 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | ARR-B | ||||||||
Protein Properties | Length: 340aa MW: 38011.1 Da PI: 6.6796 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 83.3 | 2.6e-26 | 189 | 242 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++r++W+ +LH++Fveav+q+ G+++ +Pk+ile+m+ +g+t+ehv+SHLQkYRl 462892124 189 RQRIQWSADLHRNFVEAVHQI-GIDRVVPKKILEVMGADGITREHVASHLQKYRL 242 58*******************.********************************8 PP | |||||||
2 | Response_reg | 81.5 | 2.6e-27 | 10 | 120 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH....ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd....pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl vdD+++ +++l++ l++ +y +v++++++e+ale+l++++ +Dl++ D+ mp+mdG++ll+ e+++p+i+++a++e+e++ + +k G 462892124 10 VLAVDDDRVCLKILETQLRHCKY-NVTAVTHAEAALEMLRARKdgdqFDLVISDVHMPDMDGFKLLELVGL-EMDIPVIMLSANEEMETMMKGIKHG 104 799********************.***************98888999*******************87754.558********************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a d+l+Kp+ ++l + 462892124 105 ACDYLVKPVYLDRLKN 120 *********9999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 2.42E-34 | 7 | 128 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 6.1E-40 | 7 | 164 | No hit | No description |
SMART | SM00448 | 1.4E-29 | 8 | 122 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 42.558 | 9 | 126 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 3.2E-24 | 10 | 120 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 2.63E-26 | 11 | 119 | No hit | No description |
SuperFamily | SSF46689 | 5.55E-18 | 186 | 246 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.267 | 186 | 245 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-27 | 187 | 247 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.7E-24 | 190 | 242 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.3E-7 | 193 | 241 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MESFLAGLRV LAVDDDRVCL KILETQLRHC KYNVTAVTHA EAALEMLRAR KDGDQFDLVI 60 SDVHMPDMDG FKLLELVGLE MDIPVIMLSA NEEMETMMKG IKHGACDYLV KPVYLDRLKN 120 IWLHVVKKSM NDPRDHISGG NDDASQKRQS GDAEDENNGA DDTKKHSRKN KKDGDDPEED 180 SENTSTQKRQ RIQWSADLHR NFVEAVHQIG IDRVVPKKIL EVMGADGITR EHVASHLQKY 240 RLALKKLSLG TDKQSNPCPA GTESWRTDWN YINMNGLASS PSALGMHRLL HSRSVQPISS 300 QRSLGIPVRD MGPAGNGGNL LNAAVHDVRD GHVAVDKDWK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 2e-18 | 185 | 248 | 1 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462892124 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB062095 | 3e-34 | AB062095.1 Zea mays ZmRR9 mRNA for response regulator 9, complete cds. | |||
GenBank | HQ858745 | 3e-34 | HQ858745.1 Zea mays clone UT1443 ARR-B transcription factor mRNA, partial cds. | |||
GenBank | HQ858760 | 3e-34 | HQ858760.1 Zea mays clone UT1502 ARR-B transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022681872.1 | 1e-131 | two-component response regulator ORR25 | ||||
Swissprot | Q6H805 | 1e-104 | ORR24_ORYSJ; Two-component response regulator ORR24 | ||||
TrEMBL | K3Y0Y2 | 1e-134 | K3Y0Y2_SETIT; Uncharacterized protein | ||||
STRING | Si007844m | 1e-135 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13504 | 21 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 2e-83 | response regulator 12 |
Publications ? help Back to Top | |||
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