PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462892040
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NF-X1
Protein Properties Length: 842aa    MW: 92151 Da    PI: 8.3995
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462892040genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X121.74.3e-07262279118
   zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                CG+H+C   CHeG+CppC
  462892040 262 CGIHRCPVDCHEGNCPPC 279
                ****************** PP
2zf-NF-X119.71.8e-06369388119
   zf-NF-X1   1 CGkHkCqklCHeGpCpp.Cp 19 
                CG+H+C + CH+GpC++ C+
  462892040 369 CGRHRCPERCHRGPCDEtCR 388
                *******************8 PP
3zf-NF-X116.51.8e-05422441120
   zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                CG+H C+k C+ G+C pC++
  462892040 422 CGRHACKKRCCAGDCLPCSE 441
                ******************85 PP
4zf-NF-X120.98e-07449468120
   zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                CG+HkC ++CH+G C pCp+
  462892040 449 CGNHKCLSPCHRGACSPCPL 468
                ******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.04E-5108166No hitNo description
PROSITE patternPS013590109159IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.022109160IPR001841Zinc finger, RING-type
SMARTSM004380.008209227IPR000967Zinc finger, NF-X1-type
PfamPF014220.0031210226IPR000967Zinc finger, NF-X1-type
CDDcd060084.17E-9252300No hitNo description
PfamPF014225.4E-5262279IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0012262281IPR000967Zinc finger, NF-X1-type
CDDcd060085.34E-7305345No hitNo description
PfamPF014220.84309333IPR000967Zinc finger, NF-X1-type
SMARTSM004380.027315334IPR000967Zinc finger, NF-X1-type
CDDcd060083.01E-9359408No hitNo description
PfamPF014227.6E-4369388IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0029369389IPR000967Zinc finger, NF-X1-type
CDDcd060082.72E-8412460No hitNo description
PfamPF014220.0068422440IPR000967Zinc finger, NF-X1-type
SMARTSM004380.051422441IPR000967Zinc finger, NF-X1-type
CDDcd060082.61E-10439487No hitNo description
PfamPF014225.6E-5449467IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0083449468IPR000967Zinc finger, NF-X1-type
SMARTSM0043837506527IPR000967Zinc finger, NF-X1-type
PfamPF014225.2516526IPR000967Zinc finger, NF-X1-type
PfamPF0142223535544IPR000967Zinc finger, NF-X1-type
SMARTSM00438240535580IPR000967Zinc finger, NF-X1-type
PfamPF014225.2617627IPR000967Zinc finger, NF-X1-type
SMARTSM0043886617653IPR000967Zinc finger, NF-X1-type
PfamPF014220.21666683IPR000967Zinc finger, NF-X1-type
SMARTSM004380.053666684IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 842 aa     Download sequence    Send to blast
MPSTYAAAAA GSSSRKTNRI TTASVPTARP PAPALAPAPA HSVAKPSVVS DSDPSSYSSS  60
SGDEADLTGC DSATASVVSA YLSVAGEGAD LSKVGIFLSS AARRRSPPCL ICFDPIRPSD  120
PVWSCSSSCF AILHLPCIQS WAHQSSTAAP SPTWGCPKCR FPYPKSQTPT TYLCFCTKTL  180
DPAPDPWILP HSCGDVCGRR LNANPDSGCE HTCLLLCHPG PCPPCPAVVS NARCFCGAYR  240
EPRRCAHQRY SCGGKCNKRL SCGIHRCPVD CHEGNCPPCA VRGNHKCECG ETMEEKLCSE  300
RVFQCKRECG GMLDCRKHRC DRGCHSGKCG ECPLRGRRTC PCGKKDYPKL ECDAEAATCG  360
STCEKVLGCG RHRCPERCHR GPCDETCRLV ITKSCRCGGL KKEVPCYQEL TCERKCQRLR  420
DCGRHACKKR CCAGDCLPCS EVCDRRLRCG NHKCLSPCHR GACSPCPLLK TISCACGKTN  480
FEVPCGTEKN QKPPKCSKKC NIARLCRHKL ESRPHKCHYG ACPPCKLTCG EDLSCGHKCK  540
ERCHGPISPP NPEFTLKPTK RKIEKHIECT PGTPCPPCQE VVLVPCLGQH LGQERAMLCF  600
NWRPFPCQNL CGNLLNCSNH YCTKSCHALE TPVEEDTIGS VNRGKIHAEP CEECNLPCQR  660
VREPPCSHPC PLPCHLSDCP PCKVLVKRPC HCGAMLGLVA ARVIGNYQIV PIFAQKYVTP  720
VNVRCSCNTL KQEWICQDVL KEYRKLGRDP KEVPKNQFGV GLLACGRDCI KKVKVPDSEL  780
HLRKSQENKS SVAEVANVPK RRKRRDRGQE TVEISKFQTA AFLYICAVAM LAYCCLLLRA  840
LS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1798804PKRRKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462892040
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968270.10.0NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLK3XEA60.0K3XEA6_SETIT; Uncharacterized protein
STRINGSi000223m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107733537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors