PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462891500
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ARR-B
Protein Properties Length: 684aa    MW: 73766 Da    PI: 6.4612
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462891500genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like77.41.8e-24213262151
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                kpr++W+ eLH++Fv av++L G++kA+Pk+ilelm+v+ Lt+e+v+SHLQ
  462891500 213 KPRVVWSVELHRKFVAAVNHL-GIDKAVPKRILELMNVEKLTRENVASHLQ 262
                79*******************.***************************** PP
2Response_reg783.4e-26231311109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl vdD+p+ +++l+++l++ +y +v+++ ++  al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++ +ge +++ + +  Ga 
     462891500  23 VLAVDDDPVCLKVLETLLRRCQY-HVTTTNQAVIALKMLRENRemFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSVNGETKTVMKGITHGAC 117
                   799********************.***************99999********************87754.558************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ +eel++
     462891500 118 DYLLKPVRIEELRN 131
                   ************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.0E-1801684IPR017053Response regulator B-type, plant
SuperFamilySSF521722.7E-3420145IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23005.2E-4120151No hitNo description
SMARTSM004487.3E-3121133IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.03722137IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.7E-2323132IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.40E-2624136No hitNo description
PROSITE profilePS5129411.806210269IPR017930Myb domain
SuperFamilySSF466892.33E-15211263IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.7E-24211262IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-22213263IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MRPEERSSAV GRARDQFPVG MRVLAVDDDP VCLKVLETLL RRCQYHVTTT NQAVIALKML  60
RENREMFDLV ISDVHMPDMD GFKLLELVGL EMDLPVIMLS VNGETKTVMK GITHGACDYL  120
LKPVRIEELR NIWQHVVRRK FGNRDRANID TYEECNKPPN ADLDHTHSQV TCGSPDQTGR  180
PSKKRKEYHS EEEDDEGDES NGHDNDDPSA PKKPRVVWSV ELHRKFVAAV NHLGIDKAVP  240
KRILELMNVE KLTRENVASH LQASLFTQLC SVQQVLKYRL YLKRLSAVAS QQAGIVAALA  300
GSDAFMRMGA FEGLQGYQTF TPSATLSSFS AQGLLSNPTS FGIQGMAASR SIQIGNSNST  360
ISHSIRGANK YPGNQQGNLA QGLTTPVGQV QLPQKWINEE TDDLSTILAT NGLANRAPST  420
LQSVTNGPLV QQELVECREA NVVIQPLIGT SSGSLEPLGG TVGVSSNLMD SRVSQQSCLP  480
LSAYSTSGLP MNGSFSNNVG KLGAASSGGT HICSSNDLTV ARDNKAGAAS FCSTILLPPV  540
GDQNSKYLSF GNVGSLRQNL DGTNADNLMD SKQVWSSLLS NSGAHHSMSH RSNNGSLGSR  600
MTGQASASAS AAAPQTKFDM LISGGDTLTP KNASDFSIPK LHSELSSSSC SFDGLLNSII  660
KLEKDEASFS DDLGCDFYSI GACI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A8e-23209286164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462891500
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954220.10.0two-component response regulator ORR23
SwissprotQ6K8X60.0ORR23_ORYSJ; Two-component response regulator ORR23
TrEMBLA0A0A9P9A60.0A0A0A9P9A6_ARUDO; Two-component response regulator
STRINGSi016546m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18563894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-107response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]