PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462891197
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 331aa    MW: 36632.8 Da    PI: 6.7333
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462891197genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding461.2e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lv     +G  +W+ +++  g+ R++k+c++rw +yl
        462891197 14 KGPWTAEEDQKLVGFLLTHGHCCWRIVPKLAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding54.62.4e-1770111447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       + eE+ l +d+++qlG++ W++Ia++++ gRt++++k++w+++
        462891197  70 LSDEEERLVIDLHAQLGNR-WSKIAARLP-GRTDNEIKNHWNTH 111
                      589****************.*********.************97 PP
3Myb_DNA-binding361.7e-111331601847
                      HTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  18 qlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +lG++ W++Ia++++ gRt++++k++w+++
        462891197 133 LLGNR-WSKIAARLP-GRTDNEIKNHWNTH 160
                      69*99.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-20562IPR009057Homeodomain-like
PROSITE profilePS5129413.561961IPR017930Myb domain
SuperFamilySSF466896.5E-2711108IPR009057Homeodomain-like
SMARTSM007175.1E-111363IPR001005SANT/Myb domain
PfamPF002494.0E-131461IPR001005SANT/Myb domain
CDDcd001673.22E-81661No hitNo description
PROSITE profilePS5129428.09362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.5E-2563116IPR009057Homeodomain-like
SMARTSM007176.5E-1666114IPR001005SANT/Myb domain
PfamPF002494.7E-1570111IPR001005SANT/Myb domain
CDDcd001672.01E-1271112No hitNo description
SMARTSM007170.63115163IPR001005SANT/Myb domain
PROSITE profilePS512949.336132165IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-14133162IPR009057Homeodomain-like
SuperFamilySSF466891.33E-9133169IPR009057Homeodomain-like
PfamPF002492.6E-9133160IPR001005SANT/Myb domain
CDDcd001672.79E-7136161No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MGRQPCCDKV GVKKGPWTAE EDQKLVGFLL THGHCCWRIV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL SDEEERLVID LHAQLGNRWS KIAARLPGRT DNEIKNHWNT HIKKKLRKMG  120
IXXXXXXXXX XXLLGNRWSK IAARLPGRTD NEIKNHWNTH IRKKLLRMGI DPVTHLPLHK  180
APAPPPPVQE HDPEQRAEPH QQQQQPQEQQ QPQNDGDDLL PQVEEAAMED QDKDVPLLVP  240
PPEFPAPPAA AASSVSSASA GSASVVSPSC SSAASGGVEA TEWPEPMYLF GMDGIMDAGW  300
GGLFSGADGI SLDPFEPYPG AGGFDQGDDW I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29141653108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462891197
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1074831e-154AK107483.1 Oryza sativa Japonica Group cDNA clone:002-129-C06, full insert sequence.
GenBankFJ9402171e-154FJ940217.1 Oryza sativa Japonica Group clone KCS132B07 Myb related transcription factor mRNA, complete cds.
GenBankJX2359281e-154JX235928.1 Oryza sativa Japonica Group Myb transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655982.11e-100PREDICTED: myb-related protein 308-like
TrEMBLA0A3L6EIW81e-101A0A3L6EIW8_MAIZE; Protein ODORANT1
STRINGOB06G19130.11e-100(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.11e-76myb domain protein 20