PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462890696
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 344aa    MW: 38136.8 Da    PI: 8.9532
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462890696genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM138.54.1e-43101431128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                lppG+rF Pt+eel+++yL++k++g + ++e+vi+ v++y v+Pw+L +        ++e + w++F++r++++a+g r++r+t sgyWka g+   v+s
  462890696  10 LPPGYRFFPTEEELICFYLRNKLDGLREDIERVIPVVEVYAVDPWQLSEigerrgGGAGEGEPWFYFCPRQEREARGGRPSRTTPSGYWKAAGTPGVVYS 109
                79****************************99***************8545554422336679************************************* PP

        NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                ++++++g+kkt+vfy+grap+g+kt+W m+eyr+
  462890696 110 ADRRAIGMKKTMVFYRGRAPSGTKTSWKMNEYRA 143
                ********************************95 PP
2Myb_DNA-binding25.72.7e-082853211147
                      HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      l++++ +++G g+W+ I+r    +Rt+ q+ s+ qky
        462890696 285 LFLQGLEKYGRGDWRNISRFAVRTRTPTQVASHAQKY 321
                      89**********************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.8E-477189IPR003441NAC domain
PROSITE profilePS5100546.35110190IPR003441NAC domain
PfamPF023652.4E-2311142IPR003441NAC domain
PROSITE profilePS512949.143276326IPR017930Myb domain
SuperFamilySSF466895.13E-10284325IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-6284326IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-11284325IPR006447Myb domain, plants
CDDcd001671.55E-6284322No hitNo description
PfamPF002493.0E-6285321IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MGSADMDSVL PPGYRFFPTE EELICFYLRN KLDGLREDIE RVIPVVEVYA VDPWQLSEIG  60
ERRGGGAGEG EPWFYFCPRQ EREARGGRPS RTTPSGYWKA AGTPGVVYSA DRRAIGMKKT  120
MVFYRGRAPS GTKTSWKMNE YRALHYHDAA AGADGSSSSA SAHAAAVPQS LPPPPPQLRS  180
EFSLCRLYTK SGALGQFDRR PLVAAASGPG EDPGPSTAAA ASPDDDDGSM QQMQLMERGG  240
TDPYREDMGG EIWQVVLNVE GHARGLEDEA WLVFVKYRRL GVARLFLQGL EKYGRGDWRN  300
ISRFAVRTRT PTQVASHAQK YFNRQLNPAS RDSKRKSIHD ITTP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-3011454144NO APICAL MERISTEM PROTEIN
1ut4_B8e-3011454144NO APICAL MERISTEM PROTEIN
1ut7_A8e-3011454144NO APICAL MERISTEM PROTEIN
1ut7_B8e-3011454144NO APICAL MERISTEM PROTEIN
3swm_A8e-3011457147NAC domain-containing protein 19
3swm_B8e-3011457147NAC domain-containing protein 19
3swm_C8e-3011457147NAC domain-containing protein 19
3swm_D8e-3011457147NAC domain-containing protein 19
3swp_A8e-3011457147NAC domain-containing protein 19
3swp_B8e-3011457147NAC domain-containing protein 19
3swp_C8e-3011457147NAC domain-containing protein 19
3swp_D8e-3011457147NAC domain-containing protein 19
4dul_A8e-3011454144NAC domain-containing protein 19
4dul_B8e-3011454144NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462890696
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0712741e-136AK071274.1 Oryza sativa Japonica Group cDNA clone:J023087C18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818071.11e-117NAC domain-containing protein 90-like
SwissprotQ9FMR31e-59NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A1E5URX21e-121A0A1E5URX2_9POAL; NAC domain-containing protein 90
STRINGSi002586m1e-111(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100538140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.16e-55NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]