PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462890505 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NAC | ||||||||
Protein Properties | Length: 220aa MW: 24553.7 Da PI: 4.2845 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 42.6 | 1.8e-13 | 17 | 57 | 1 | 42 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv 42 lppGfrFhPtd+elv +yL++k++g++l++ +i+evd+y++ 462890505 17 LPPGFRFHPTDDELVEHYLCRKAAGQRLPV-PIIAEVDLYNY 57 79****************************.88******987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.23E-15 | 13 | 57 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 9.892 | 17 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.9E-8 | 18 | 79 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MGMAVRRERD AEAELNLPPG FRFHPTDDEL VEHYLCRKAA GQRLPVPIIA EVDLYNYMVA 60 LIDLGERIDS ILDDWVLCRL YNKKNEWEKM QMGKMSGAAA ATTTKEEAGD MTTSYSHSHS 120 WGETRTPESE IVDNDPFPEL DSFPAFQDPA APMMVPKKEK VDDAGAVAKN DLFMDLSYDD 180 IQSMYSGLDM LPPSGEDFYS SLFASPRVKG NQPAGGMAPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-30 | 3 | 57 | 1 | 55 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that possesses transactivation activity (PubMed:16924117, PubMed:20632034). Transcription activator involved in response to abiotic stresses. Plays a positive role during dehydration and salt stress. Binds specifically to the 5'-CATGTG-3' motif found in promoters of stress-responsive genes (PubMed:16924117). {ECO:0000269|PubMed:16924117, ECO:0000269|PubMed:20632034}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462890505 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stresss, salt stress and cold stress (PubMed:16924117, PubMed:20632034). Induced by abscisic acid (ABA) (PubMed:16924117). Induced by methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:16924117, ECO:0000269|PubMed:20632034}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU500625 | 1e-134 | KU500625.1 Eleusine coracana cultivar Trichy1 NAC transcription factor (NAC67) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004981295.1 | 9e-74 | NAC domain-containing protein 67 | ||||
Swissprot | Q75HE5 | 1e-56 | NAC2_ORYSJ; NAC domain-containing protein 2 | ||||
TrEMBL | A0A191UR35 | 1e-81 | A0A191UR35_ELECO; NAC transcription factor | ||||
STRING | Si036695m | 3e-73 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4414 | 30 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 3e-18 | NAC family protein |
Publications ? help Back to Top | |||
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