PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462890410 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | bHLH | ||||||||
Protein Properties | Length: 225aa MW: 24650.4 Da PI: 6.9403 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.8 | 8.1e-13 | 159 | 204 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L++l+P+ +k + +e+L AveYIk+Lq 462890410 159 SIAERERRTRISKRLKKLQDLVPNM----DKQTNTSEMLDIAVEYIKELQ 204 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.392 | 153 | 203 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.67E-16 | 156 | 215 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.72E-13 | 157 | 208 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.8E-16 | 158 | 214 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.1E-13 | 159 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.6E-10 | 159 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MADHHGVAAT TGMGSYSHAG TDAMTHGHRR LSSQWSFSRQ DLPQISEMGM IPDIGESMVA 60 GGCNSSSDGG AHSSSYLSRN FSMNSWDDTN SIMFSSPGKK AKVDAADDMV TSFSNIDSQF 120 SLSKSSLEMS GMDDFLQLQQ DSVACRVRAK RGCATHPRSI AERERRTRIS KRLKKLQDLV 180 PNMDKQTNTS EMLDIAVEYI KELQGQVEKL KHDQANCSCA GNQNS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462890410 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025814593.1 | 1e-144 | transcription factor bHLH128-like | ||||
Swissprot | Q8H102 | 3e-51 | BH128_ARATH; Transcription factor bHLH128 | ||||
TrEMBL | A0A0A9DES0 | 1e-143 | A0A0A9DES0_ARUDO; Uncharacterized protein | ||||
TrEMBL | A0A2S3HP78 | 1e-143 | A0A2S3HP78_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J01306.1.p | 1e-140 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7071 | 37 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05805.1 | 6e-52 | bHLH family protein |
Publications ? help Back to Top | |||
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