PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462890091
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family DBB
Protein Properties Length: 364aa    MW: 39065.3 Da    PI: 4.3984
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462890091genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.32.8e-07447542
   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                C+ ++  e++  C  ++  lC  C +e H        H++vpl
  462890091  4 QCNACGAAEARVLCCADEAALCGACDEEVHAAnklagkHQRVPL 47
               7******99*********************66899999999986 PP
2zf-B_box29.51.6e-095991335
   zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHk 35
                +kC+ ++e    +fC +++ llC+dC +++H 
  462890091 59 VPKCDICQEASGYFFCLEDRALLCRDCDVAIHT 91
               689***************************993 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.509147IPR000315B-box-type zinc finger
CDDcd000216.11E-9347No hitNo description
PfamPF006431.3E-5447IPR000315B-box-type zinc finger
SMARTSM003361.3E-9447IPR000315B-box-type zinc finger
PROSITE profilePS501198.98757104IPR000315B-box-type zinc finger
SMARTSM003362.3E-1657104IPR000315B-box-type zinc finger
PfamPF006431.9E-75999IPR000315B-box-type zinc finger
CDDcd000218.07E-1160104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MKIQCNACGA AEARVLCCAD EAALCGACDE EVHAANKLAG KHQRVPLLQD DAPAAASAVP  60
KCDICQEASG YFFCLEDRAL LCRDCDVAIH TVNPFVSAHQ RFLLTGVQVA LDPADPVPPV  120
ADKRTNAADG GSLYLPTKNM SGRNPTVPSS GEGSDFVPSR NVINGNYSRK NSVPTDSTGE  180
VNWTMNNSTI RSLELRPEYL SDESPTLLQS GQATAAFSNQ VNKDNDPAYN LPLPSGNGSE  240
SLPDWPVDEF FSSSEFGPNF SFAEHCSPKG DNTKLGSAGG SPQCRLAEGF VAEELLDLVP  300
GFDAEESWTV PEVPSPPTAS GLYWQGNFRY PAYDSTVFVP EVSSLQISQN NFAVPGGFKR  360
RRQF
Cis-element ? help Back to Top
SourceLink
PlantRegMap462890091
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811997.10.0B-box zinc finger protein 22-like
TrEMBLA0A2T7E2Y00.0A0A2T7E2Y0_9POAL; Uncharacterized protein
STRINGPavir.J07875.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17943382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.13e-58light-regulated zinc finger protein 1