PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462890006 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NAC | ||||||||
Protein Properties | Length: 146aa MW: 17156.9 Da PI: 9.8725 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 134.4 | 7.6e-42 | 28 | 143 | 3 | 118 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvg 101 GfrFhPtdeelv++yLk+kv++ l++ ++++diyk++PwdLpk ++ +ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+ +++ +g 462890006 28 DGFRFHPTDEELVSFYLKRKVQEMFLDI-GLMRQLDIYKYDPWDLPKLASIGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSeGTKCIG 126 6************************999.89***************8888899***************************************956667** PP NAM 102 lkktLvfykgrapkgek 118 lkk+Lvfykg+ +kg++ 462890006 127 LKKSLVFYKGELQKGSR 143 **********9999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 42.066 | 26 | 146 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.57E-42 | 28 | 142 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-20 | 29 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
MGKEMIGKYE AIKCTRRKTD EEKSMIIDGF RFHPTDEELV SFYLKRKVQE MFLDIGLMRQ 60 LDIYKYDPWD LPKLASIGEK EWYFYCPRDR KYRNSARPNR VTGAGFWKAT GTDRPIYSSE 120 GTKCIGLKKS LVFYKGELQK GSRLIG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 8e-42 | 16 | 143 | 4 | 130 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462890006 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022734826.1 | 4e-71 | protein FEZ-like | ||||
Swissprot | Q9ZVH0 | 3e-69 | FEZ_ARATH; Protein FEZ | ||||
TrEMBL | A0A2P5D183 | 3e-69 | A0A2P5D183_TREOI; NAC domain containing protein | ||||
TrEMBL | A0A453KYM9 | 6e-71 | A0A453KYM9_AEGTS; Uncharacterized protein | ||||
STRING | Traes_5AL_F35B9FF8E.1 | 1e-71 | (Triticum aestivum) | ||||
STRING | Traes_5DL_0713E8429.2 | 1e-71 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14845 | 11 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26870.1 | 1e-71 | NAC family protein |
Publications ? help Back to Top | |||
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