PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462889477
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 172aa    MW: 19892.7 Da    PI: 10.3187
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462889477genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.35.1e-52151491129
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..... 95 
                lppGfrF Ptdee+++ yL +k  + +++  +++ ev+++++ePwdLp+k++ +ekewyfF+++  ky+tg+r+nratk+gyWkatg+d+e++++     
  462889477  15 LPPGFRFYPTDEEVITSYLLQKFLNPSFSP-RAMGEVNLNTCEPWDLPSKARMGEKEWYFFCHKGMKYPTGSRTNRATKEGYWKATGRDREIFKTasasa 113
                79*************************999.88***************999999****************************************988888 PP

        NAM  96 ..kgelvglkktLvfykgrapkgektdWvmheyrle 129
                  ++elvg+kktLvfy grap+g+kt+Wvmheyrle
  462889477 114 ggGRELVGMKKTLVFYMGRAPRGSKTNWVMHEYRLE 149
                777777****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.55E-5612156IPR003441NAC domain
PROSITE profilePS5100550.76215165IPR003441NAC domain
PfamPF023651.3E-2716148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MVERGVKSEQ GDLFLPPGFR FYPTDEEVIT SYLLQKFLNP SFSPRAMGEV NLNTCEPWDL  60
PSKARMGEKE WYFFCHKGMK YPTGSRTNRA TKEGYWKATG RDREIFKTAS ASAGGGRELV  120
GMKKTLVFYM GRAPRGSKTN WVMHEYRLEG KSKDNNHSNL RFNPKVQNRN KY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-491316018157NAC domain-containing protein 19
3swm_B3e-491316018157NAC domain-containing protein 19
3swm_C3e-491316018157NAC domain-containing protein 19
3swm_D3e-491316018157NAC domain-containing protein 19
3swp_A3e-491316018157NAC domain-containing protein 19
3swp_B3e-491316018157NAC domain-containing protein 19
3swp_C3e-491316018157NAC domain-containing protein 19
3swp_D3e-491316018157NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response (By similarity). Binds to DNA-specific sequences of CLPD1 and OAT promoters in vitro (PubMed:18813954). {ECO:0000250|UniProtKB:Q7F2L3, ECO:0000269|PubMed:18813954}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462889477
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977422.11e-97NAC domain-containing protein 77
SwissprotQ5CD172e-81NAC77_ORYSJ; NAC domain-containing protein 77
TrEMBLA0A3L6PH659e-98A0A3L6PH65_PANMI; NAC domain-containing protein 77-like
STRINGPavir.J21394.1.p1e-101(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51203063
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.26e-70Arabidopsis NAC domain containing protein 87