PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462889474
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 372aa    MW: 40541.4 Da    PI: 9.0914
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462889474genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.15.1e-51151491129
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..... 95 
                lppGfrF Ptdee+++ yL +k  + +++  +++ ev+++++ePwdLp+k++ +ekewyfF+++  ky+tg+r+nratk+gyWkatg+d+e+++      
  462889474  15 LPPGFRFYPTDEEVITSYLLQKFLNPSFSP-RAMGEVNLNTCEPWDLPSKARMGEKEWYFFCHKGMKYPTGSRTNRATKEGYWKATGRDREIFKPasasa 113
                79*************************999.88***************999999****************************************988888 PP

        NAM  96 ..kgelvglkktLvfykgrapkgektdWvmheyrle 129
                  ++elvg+kktLvfy grap+g+kt+Wvmheyrle
  462889474 114 ggGRELVGMKKTLVFYMGRAPRGSKTNWVMHEYRLE 149
                777777****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-5912176IPR003441NAC domain
PROSITE profilePS5100555.6615176IPR003441NAC domain
PfamPF023651.4E-2616148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MVERGVKSEQ GDLFLPPGFR FYPTDEEVIT SYLLQKFLNP SFSPRAMGEV NLNTCEPWDL  60
PSKARMGEKE WYFFCHKGMK YPTGSRTNRA TKEGYWKATG RDREIFKPAS ASAGGGRELV  120
GMKKTLVFYM GRAPRGSKTN WVMHEYRLEG KSKDNNHSNL RFNPKDEWVV CKVFNKKMEE  180
KKAAVEYSAG TPNVSSISVD AAGDDGGDDF LDSMIDPMSY LNSTVGTMND AVAPYNAAAT  240
TTTSANRDTK SRNLHQAAVA HSTVPTSSSG YSSSWNLHQA NHAMGNSYNL HDQAMMARAL  300
GGVISPNLAG GLPSYLTPFT GISQQSSLGV PQQKLEPDYG GSYATNYLAS AAAANSAVTG  360
KASRNLAWLL GA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-521318215171NO APICAL MERISTEM PROTEIN
1ut4_B1e-521318215171NO APICAL MERISTEM PROTEIN
1ut7_A1e-521318215171NO APICAL MERISTEM PROTEIN
1ut7_B1e-521318215171NO APICAL MERISTEM PROTEIN
4dul_A1e-521318215171NAC domain-containing protein 19
4dul_B1e-521318215171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response (By similarity). Binds to DNA-specific sequences of CLPD1 and OAT promoters in vitro (PubMed:18813954). {ECO:0000250|UniProtKB:Q7F2L3, ECO:0000269|PubMed:18813954}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462889474
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977422.11e-161NAC domain-containing protein 77
SwissprotQ5CD171e-110NAC77_ORYSJ; NAC domain-containing protein 77
TrEMBLK3Y8761e-160K3Y876_SETIT; Uncharacterized protein
STRINGSi010417m1e-161(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51203063
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.22e-75Arabidopsis NAC domain containing protein 87