PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462889453

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

NAC

Protein Properties

Length: 359aa MW: 40119.1 Da PI: 6.9948

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462889453	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	164	5.6e-51	10	137	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 lp+GfrFhPtdeel+v+yL +++++ ++++ +i+ev+iy+++PwdLp k+ +e+ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk++ls+ ++e+ 462889453 10 LPAGFRFHPTDEELIVHYLMNQAASIPCPV-PIIAEVNIYQCNPWDLPPKALFGENEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKAILSTpTSEN 108 799*************************.88**********96666789**********************************9989999 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +g+kk Lvfy+g+ pkg ktdW+mheyrl 462889453 109 IGVKKALVFYRGKPPKGIKTDWIMHEYRL 137 *************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.59E-64	5	165	IPR003441	NAC domain
PROSITE profile	PS51005	58.919	10	165	IPR003441	NAC domain
Pfam	PF02365	7.4E-26	11	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MVSSSRMPSL PAGFRFHPTD EELIVHYLMN QAASIPCPVP IIAEVNIYQC NPWDLPPKAL 60 FGENEWYFFS PRDRKYPNGA RPNRAAGSGY WKATGTDKAI LSTPTSENIG VKKALVFYRG 120 KPPKGIKTDW IMHEYRLTVG NKTTKRKGSS SMRLDDWVLC RIYKKSNNFQ FSDHEREGST 180 VEEDSSLTTN NMMNGVPSLK SEAAHASDDD QFRPLSMAKS CSLTDILNTI DYSTLSELLL 240 DVPAGPEPQQ SPLIYTTPAS HSLNDVNNCI NMPQVDALYS DYGANYNGLK RKRIMPVDGA 300 SSFDDGSSFT KKTQLPSDSR SGCNQLIAEA SSSFQYSHLL SHPFLNQQQL LLNNHLEMQ

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MVSSSRMPSL PAGFRFHPTD EELIVHYLMN QAASIPCPVP IIAEVNIYQC NPWDLPPKAL  60
FGENEWYFFS PRDRKYPNGA RPNRAAGSGY WKATGTDKAI LSTPTSENIG VKKALVFYRG  120
KPPKGIKTDW IMHEYRLTVG NKTTKRKGSS SMRLDDWVLC RIYKKSNNFQ FSDHEREGST  180
VEEDSSLTTN NMMNGVPSLK SEAAHASDDD QFRPLSMAKS CSLTDILNTI DYSTLSELLL  240
DVPAGPEPQQ SPLIYTTPAS HSLNDVNNCI NMPQVDALYS DYGANYNGLK RKRIMPVDGA  300
SSFDDGSSFT KKTQLPSDSR SGCNQLIAEA SSSFQYSHLL SHPFLNQQQL LLNNHLEMQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-74	9	170	14	173	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269\|PubMed:22278768}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462889453

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269\|PubMed:18813954}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN673545	1e-164	JN673545.1 Panicum virgatum cultivar Summer VS16 NAC transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025828039.1	1e-167	NAC transcription factor 29-like
Swissprot	Q8H4S4	5e-84	NAC10_ORYSJ; NAC domain-containing protein 10
TrEMBL	A0A2S3IC67	1e-166	A0A2S3IC67_9POAL; Uncharacterized protein
STRING	Si026530m	1e-161	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3803	37	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	1e-84	NAC-like, activated by AP3/PI

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]