PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462889327 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | TALE | ||||||||
Protein Properties | Length: 221aa MW: 24706.1 Da PI: 7.5433 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.7 | 2.2e-09 | 156 | 188 | 23 | 55 |
SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 +yp++e++ +LA+ +gL+ +q+ +WF N+R ++ 462889327 156 PYPTEEDKVRLASMTGLDPKQINNWFINQRKRH 188 8*****************************885 PP | |||||||
2 | ELK | 33.7 | 7.9e-12 | 108 | 129 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++Ll+KYsg+L+ L++EF+ 462889327 108 ELKEMLLKKYSGCLSRLRSEFL 129 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.5E-6 | 37 | 77 | IPR005540 | KNOX1 |
Pfam | PF03790 | 7.3E-11 | 39 | 61 | IPR005540 | KNOX1 |
PROSITE profile | PS51213 | 10.423 | 108 | 128 | IPR005539 | ELK domain |
Pfam | PF03789 | 9.2E-9 | 108 | 129 | IPR005539 | ELK domain |
SMART | SM01188 | 3.6E-6 | 108 | 129 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.455 | 128 | 191 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.71E-20 | 130 | 199 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.2E-14 | 130 | 195 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-27 | 133 | 193 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.11E-13 | 140 | 192 | No hit | No description |
Pfam | PF05920 | 5.2E-17 | 148 | 187 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 166 | 189 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MEDLYSIHPG ISRVGGAASE ASIVGVGSGP SSADLTELMK AQIASHPRYP SLLSAYIECR 60 KGQIVSMQMG CTAVRDEMMV SSEDEQCSGD TDVADMGQEH SSRLADHELK EMLLKKYSGC 120 LSRLRSEFLK KRKKGKLPKD ARLVLLDWWN THYRWPYPTE EDKVRLASMT GLDPKQINNW 180 FINQRKRHWK PSEDMRFALM EGVAGGSSGT TLYFDTGTIG P |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 123 | 132 | LRSEFLKKRK |
2 | 129 | 133 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}. | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:10488233}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462889327 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU966118 | 1e-143 | EU966118.1 Zea mays clone 291871 homeobox protein OSH1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004967561.1 | 1e-100 | homeobox protein knotted-1-like 1 | ||||
Swissprot | A2Y007 | 4e-87 | KNOSA_ORYSI; Homeobox protein knotted-1-like 10 | ||||
Swissprot | Q7GDL5 | 4e-87 | KNOSA_ORYSJ; Homeobox protein knotted-1-like 10 | ||||
TrEMBL | B9FM99 | 1e-101 | B9FM99_ORYSJ; Uncharacterized protein | ||||
STRING | GRMZM2G087741_P01 | 3e-97 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1698 | 38 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23380.2 | 3e-42 | KNOTTED1-like homeobox gene 6 |