PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462889309
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 375aa    MW: 41869.3 Da    PI: 7.5001
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462889309genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.62e-52161431128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                l+pGfrFhPtdeelv++yLk+k+++k++++ e i+++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t++g+Wkatg+d++++s+ +++ 
  462889309  16 LMPGFRFHPTDEELVSFYLKRKIQQKPISI-ELIRQLDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSVRPNRVTAAGFWKATGTDRPIYSSeGTKC 114
                689***************************.89***************9888999***************************************956667 PP

        NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                +glkk+Lvfykgra +g ktdW+mhe+rl
  462889309 115 IGLKKSLVFYKGRAARGLKTDWMMHEFRL 143
                ***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-5815174IPR003441NAC domain
PROSITE profilePS5100557.42416174IPR003441NAC domain
PfamPF023658.2E-2618143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0045770Biological Processpositive regulation of asymmetric cell division
GO:0048103Biological Processsomatic stem cell division
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MEERNDINMD KSDEILMPGF RFHPTDEELV SFYLKRKIQQ KPISIELIRQ LDIYKYDPWD  60
LPKLASTGEK EWYFYCPRDR KYRNSVRPNR VTAAGFWKAT GTDRPIYSSE GTKCIGLKKS  120
LVFYKGRAAR GLKTDWMMHE FRLPSPADTS LPKRPIDKNI PLNDSWTICR IFKKTTSMAQ  180
RGLLHTWGPP FPGAAEAEML SAFQTVQASE FALESSSCSL QVAPPAHSSQ FTSRHGLQGP  240
QSNPPVEGSS CKLITFNCSS SLEPQNSPII LPFEAPTSHK AGPVSLVFGA QPDHQLNGFV  300
VDSSADVNGG ASSRSQDSST RKPSNGFSMN SIDWEAVGRI NFPFDLGTDS SEELRCNIPW  360
ESFLSPAAVP TELPH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-521617717168NO APICAL MERISTEM PROTEIN
1ut4_B1e-521617717168NO APICAL MERISTEM PROTEIN
1ut7_A1e-521617717168NO APICAL MERISTEM PROTEIN
1ut7_B1e-521617717168NO APICAL MERISTEM PROTEIN
4dul_A1e-521617717168NAC domain-containing protein 19
4dul_B1e-521617717168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462889309
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822140.10.0protein FEZ-like
SwissprotQ9ZVH02e-97FEZ_ARATH; Protein FEZ
TrEMBLK3YMN30.0K3YMN3_SETIT; Uncharacterized protein
STRINGSi015514m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33663882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.12e-99NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]