PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462889166 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NAC | ||||||||
Protein Properties | Length: 195aa MW: 20592.9 Da PI: 10.9785 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 97.1 | 2.7e-30 | 18 | 169 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp.k..kvkaeekewyfFskrdkkyatgkrknra......tksgyWkatgkdk 90 lppGfrF+Ptdeelvv+yL++k+ g +l++ vi+ v ++y+++Pwd+p +++a+ e yfF+ r ++ g+ ++ + t+sg+Wk gk++ 462889166 18 LPPGFRFRPTDEELVVQYLRRKAFGVPLPA-AVIPVVaNLYSLDPWDIPgIaaTTSASGGEKYFFAVRPASSGAGECARAKsvggvsTASGRWKPAGKER 116 79****************************.7888888***********5333333355599******999987764444356888899*********** PP NAM 91 evlsk.....kgelvglkktLvfy..........kgrapkgektdWvmheyrl 128 +v+ + ++ lvg+k+ L+f +++a g + Wvmheyrl 462889166 117 PVVLSrpcggGSLLVGVKRELAFAprrgkkknsnRASAAVGLTAGWVMHEYRL 169 ***98898877777**********997665554334555566999******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-35 | 12 | 179 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 37.457 | 18 | 195 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.6E-19 | 19 | 169 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MAESAPVLVR HAGGVSALPP GFRFRPTDEE LVVQYLRRKA FGVPLPAAVI PVVANLYSLD 60 PWDIPGIAAT TSASGGEKYF FAVRPASSGA GECARAKSVG GVSTASGRWK PAGKERPVVL 120 SRPCGGGSLL VGVKRELAFA PRRGKKKNSN RASAAVGLTA GWVMHEYRLA APLHKNVRIE 180 PAFLLTSHHF VLCVA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-20 | 17 | 176 | 16 | 149 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-20 | 17 | 176 | 16 | 149 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-20 | 17 | 176 | 16 | 149 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-20 | 17 | 176 | 16 | 149 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-20 | 17 | 176 | 16 | 149 | NAC domain-containing protein 19 |
4dul_B | 2e-20 | 17 | 176 | 16 | 149 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462889166 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT086571 | 3e-42 | BT086571.1 Zea mays full-length cDNA clone ZM_BFc0184N14 mRNA, complete cds. | |||
GenBank | DQ245491 | 3e-42 | DQ245491.1 Zea mays clone 16115 mRNA sequence. | |||
GenBank | DQ246095 | 3e-42 | DQ246095.1 Zea mays clone 16151 mRNA sequence. | |||
GenBank | EU970906 | 3e-42 | EU970906.1 Zea mays clone 353721 NAC domain-containing protein 68 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025820406.1 | 3e-79 | NAC domain-containing protein 18-like isoform X1 | ||||
TrEMBL | A0A2S3I494 | 7e-78 | A0A2S3I494_9POAL; Uncharacterized protein | ||||
STRING | Si014408m | 8e-77 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11818 | 31 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33480.2 | 7e-25 | NAC domain containing protein 41 |