PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462889148
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 111aa    MW: 12688.6 Da    PI: 10.0508
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462889148genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.74.1e-111544130
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIart 30
                     +g+WT+eEd++l+ +++q+G g+W++ +++
        462889148 15 KGPWTPEEDQKLLAYIEQHGHGCWRSLPAK 44
                     79***********************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.8421088IPR017930Myb domain
SuperFamilySSF466896.96E-91246IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.8E-231378IPR009057Homeodomain-like
SMARTSM007176.4E-121486IPR001005SANT/Myb domain
CDDcd001672.33E-91784No hitNo description
PfamPF139212.2E-1218100No hitNo description
SuperFamilySSF466899.67E-1169111IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.5E-1179111IPR009057Homeodomain-like
PROSITE profilePS512948.01289111IPR017930Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MGRSPCCEKE AGLKKGPWTP EEDQKLLAYI EQHGHGCWRS LPAKAVQNVR PRMDGSDDGV  60
ACFRRAPGLR RCGKSCRLRW TNYLRPDIKR GKFTLQEEQT IIQLHALLGN R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-1413111580B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462889148
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0544452e-60BT054445.1 Zea mays full-length cDNA clone ZM_BFc0062P12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021315868.11e-54transcription factor MYB16
RefseqXP_025817649.11e-54transcription factor MYB106-like
SwissprotQ9LE631e-49MY106_ARATH; Transcription factor MYB106
TrEMBLA0A2S3GQC22e-53A0A2S3GQC2_9POAL; Uncharacterized protein
TrEMBLA3A8C22e-53A3A8C2_ORYSJ; Uncharacterized protein
TrEMBLQ6EP512e-53Q6EP51_ORYSJ; MYB27 protein-like
STRINGPavir.Ab02021.1.p4e-54(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.15e-51myb domain protein 16