PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462889112
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MIKC_MADS
Protein Properties Length: 260aa    MW: 29241.8 Da    PI: 8.3824
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462889112genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.95.6e-281059251
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               ri+n++ rqvtfskRrngi+KKA+EL +LCdaev ++ifsstg+lyeyss
  462889112 10 RIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEYSS 59
               8***********************************************96 PP
2K-box592e-20791521185
      K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 
                +a+ +s  +  +kL+  + +L r+   l+GedL+ Ls keLq+Le+qLe+sl+ +RskK++ll+e+i+el +k  
  462889112  79 AANPNSELKGGSKLETTTAQLARK-SSLMGEDLSGLSAKELQSLENQLETSLRGVRSKKDQLLVEEIHELNRKVP 152
                4555555566689*********99.9*********************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.2E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.651161IPR002100Transcription factor, MADS-box
CDDcd002651.78E-45277No hitNo description
SuperFamilySSF554555.1E-32282IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003199.5E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.75475183IPR002487Transcription factor, K-box
PfamPF014862.3E-1698177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRNGIFK KAKELAILCD AEVGLMIFSS TGRLYEYSST  60
SMKSVIDRYG KAKEEQQVAA NPNSELKGGS KLETTTAQLA RKSSLMGEDL SGLSAKELQS  120
LENQLETSLR GVRSKKDQLL VEEIHELNRK VPHHYNTTVP KEASLFHQEN MDLYTKINLI  180
RQENAELYKK IYETEGPSEV NRESPTPYNF AVVENTNVPV QLGLNTLPQQ DDTEPSTAPK  240
LGTNQTGTDT NYKHDYHSTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-20183183MEF2C
5f28_B4e-20183183MEF2C
5f28_C4e-20183183MEF2C
5f28_D4e-20183183MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462889112
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1121491e-112AF112149.1 Zea mays MADS box protein 2 (mads2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952891.11e-136MADS-box transcription factor 27
SwissprotQ6EP491e-130MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A0D9YU321e-142A0A0D9YU32_9ORYZ; Uncharacterized protein
STRINGOGLUM02G22050.11e-143(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61435130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.15e-80AGAMOUS-like 16
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]