PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462889032
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MIKC_MADS
Protein Properties Length: 233aa    MW: 26617.3 Da    PI: 6.9887
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462889032genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.61.7e-23958150
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
               krien ++rq tf kRr g++KKA ELSvLCd++ ++++fs +gkly y 
  462889032  9 KRIENPTQRQSTFYKRRDGLFKKARELSVLCDVDLLLLLFSASGKLYHYL 58
               79*********************************************996 PP
2K-box22.83.9e-091232061598
      K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                ++ + ela++    e L++e+R +  +d e+ ++  L+ Le++Le ++ k+R  K++ +  +i++l +  +  qee   L  +l
  462889032 123 QERRAELAQVAHMCELLETELRFMTVDDGEQYTVPSLEMLEHNLEAAMHKVRCEKDRKIGGEINYLENVIRGRQEERYGLCDQL 206
                6678999***********************************************************999999999888776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.202161IPR002100Transcription factor, MADS-box
SMARTSM004322.1E-32160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.11E-27285IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004049.8E-23323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004049.8E-232338IPR002100Transcription factor, MADS-box
PRINTSPR004049.8E-233859IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.445122212IPR002487Transcription factor, K-box
PfamPF014867.6E-12122206IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MGRGRGEIKR IENPTQRQST FYKRRDGLFK KARELSVLCD VDLLLLLFSA SGKLYHYLSP  60
TVPSVKELVE RYEAATHTKV WTDIQQVKFV NIYSGDCYTH VHLTISISVS RVLAPHGDCC  120
SRQERRAELA QVAHMCELLE TELRFMTVDD GEQYTVPSLE MLEHNLEAAM HKVRCEKDRK  180
IGGEINYLEN VIRGRQEERY GLCDQLAHSQ TLKDVEAGSN ANNNGLDLKL GFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A5e-14186190MEF2 CHIMERA
6byy_B5e-14186190MEF2 CHIMERA
6byy_C5e-14186190MEF2 CHIMERA
6byy_D5e-14186190MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462889032
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0376402e-93BT037640.1 Zea mays full-length cDNA clone ZM_BFb0185F01 mRNA, complete cds.
GenBankBT0680042e-93BT068004.1 Zea mays full-length cDNA clone ZM_BFb0028K02 mRNA, complete cds.
GenBankEU9750462e-93EU975046.1 Zea mays clone 465896 MADS-box transcription factor 32 mRNA, complete cds.
GenBankKJ7269192e-93KJ726919.1 Zea mays clone pUT3464 MADS transcription factor (MADS43) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644649.11e-114PREDICTED: MADS-box transcription factor 32 isoform X1
SwissprotQ8S1511e-112MAD32_ORYSJ; MADS-box transcription factor 32
TrEMBLA0A3Q8BBY81e-113A0A3Q8BBY8_BAMML; MADS32
STRINGOB01G38450.11e-113(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119233439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26310.12e-18MIKC_MADS family protein
Publications ? help Back to Top
  1. Wang H, et al.
    OsMADS32 interacts with PI-like proteins and regulates rice flower development.
    J Integr Plant Biol, 2015. 57(5): p. 504-13
    [PMID:25081486]
  2. Khanday I, et al.
    Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties.
    Plant Physiol., 2016. 172(1): p. 372-88
    [PMID:27457124]