PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462888593

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

HB-PHD

Protein Properties

Length: 693aa MW: 76012.9 Da PI: 4.396

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462888593	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	19.2	2.1e-06	653	683	13	43
HHHHHHHHHSSS--HHHHHHHHHHCTS-HHH CS Homeobox 13 eeLeelFeknrypsaeereeLAkklgLterq 43 ++L e+F+ ++yps++ +e LA++lg+t rq 462888593 653 QRLHEHFKTEQYPSRDVKESLAEELGITPRQ 683 689*************************998 PP
2	PHD	40	9e-14	282	337	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ Cg+ + +++++lCdg C++ fH++Cl++ l +e++p+g wlC+ C++k 462888593 282 FCATCGSkdVTLNNDIILCDGvCDRGFHQNCLSPALLTEDIPDGdkGWLCPACDCK 337 7****64445****77*****************999*****985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57903	5.54E-14	272	341	IPR011011	Zinc finger, FYVE/PHD-type
Gene3D	G3DSA:3.30.40.10	2.8E-13	278	336	IPR013083	Zinc finger, RING/FYVE/PHD-type
PROSITE profile	PS50016	10.976	280	337	IPR019787	Zinc finger, PHD-finger
CDD	cd15504	1.89E-24	282	334	No hit	No description
SMART	SM00249	1.7E-10	282	335	IPR001965	Zinc finger, PHD-type
Pfam	PF00628	5.5E-11	282	337	IPR019787	Zinc finger, PHD-finger
PROSITE pattern	PS01359	0	283	334	IPR019786	Zinc finger, PHD-type, conserved site
Gene3D	G3DSA:1.10.10.60	8.4E-7	630	683	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.56E-5	641	683	IPR009057	Homeodomain-like
CDD	cd00086	3.05E-6	647	683	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 693 aa Download sequence Send to blast
ASPTPSAPAP AGDESRRPRS CFAAARGCQV LVNQAQLSRA SGFWAFFVNC KLTNFFGYHT 60 MDKNTDPCPI EGNGEIGNNV SSSQNPETLE QQVSPSTSQV VQNTMGVRKN YKRAANRGKN 120 GSQVLTGKKY TLRSSGNDTR VLRSKSNSMV VPAEPVQPPV QPPAKRRKRG RPSKGNPGKR 180 GRPSNGGPSD EFSQIRNRVK YILHKMGYEQ NMLEAYANEG WKSQSLEKIR PEKELERAKG 240 EILRRKLQIR EVFQNLDSLL SKGKIDESLF DSDGEIASED IFCATCGSKD VTLNNDIILC 300 DGVCDRGFHQ NCLSPALLTE DIPDGDKGWL CPACDCKIDC IKEINELQGS DISIDDSWEK 360 VFPEAAALAN GSKQDETLDL PSDDSEDDDF DPDMAEEHVA SKEEGSSEED EDEGSDSDDS 420 NFLTSSDSEP LMNKKKADDL GLPSEDSEDD DYDPAGPDSD KDIQKEKSSS DESDFTSDSD 480 EFCVEIAKSG DHDEVSKPSF PDAEAGDTTC DMGKSTALAD TANSSLNSME AEMNQNLVLP 540 GSGRRKVERL DYKKLYDETY DKESSDSSDD EEWSGNSTPE KGNEESSEDE ANPSAVKSSR 600 RTRVAPHNGE LTPQTGHPDS LHGSADQKCG GDLTSNGSNS TTRKGQFGPI INQRLHEHFK 660 TEQYPSRDVK ESLAEELGIT PRQWLLLTGQ QMV

Sequence ? help Back to Top

Protein Sequence Length: 693 aa Download sequence Send to blast

ASPTPSAPAP AGDESRRPRS CFAAARGCQV LVNQAQLSRA SGFWAFFVNC KLTNFFGYHT  60
MDKNTDPCPI EGNGEIGNNV SSSQNPETLE QQVSPSTSQV VQNTMGVRKN YKRAANRGKN  120
GSQVLTGKKY TLRSSGNDTR VLRSKSNSMV VPAEPVQPPV QPPAKRRKRG RPSKGNPGKR  180
GRPSNGGPSD EFSQIRNRVK YILHKMGYEQ NMLEAYANEG WKSQSLEKIR PEKELERAKG  240
EILRRKLQIR EVFQNLDSLL SKGKIDESLF DSDGEIASED IFCATCGSKD VTLNNDIILC  300
DGVCDRGFHQ NCLSPALLTE DIPDGDKGWL CPACDCKIDC IKEINELQGS DISIDDSWEK  360
VFPEAAALAN GSKQDETLDL PSDDSEDDDF DPDMAEEHVA SKEEGSSEED EDEGSDSDDS  420
NFLTSSDSEP LMNKKKADDL GLPSEDSEDD DYDPAGPDSD KDIQKEKSSS DESDFTSDSD  480
EFCVEIAKSG DHDEVSKPSF PDAEAGDTTC DMGKSTALAD TANSSLNSME AEMNQNLVLP  540
GSGRRKVERL DYKKLYDETY DKESSDSSDD EEWSGNSTPE KGNEESSEDE ANPSAVKSSR  600
RTRVAPHNGE LTPQTGHPDS LHGSADQKCG GDLTSNGSNS TTRKGQFGPI INQRLHEHFK  660
TEQYPSRDVK ESLAEELGIT PRQWLLLTGQ QMV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	542	549	GRRKVERL

Functional Description ? help Back to Top
Source	Description
UniProt	Interacts with the shrunken (SHR) 26 bp feedback control element.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462888593

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004961485.1	0.0	homeobox protein HOX1A isoform X1
Swissprot	P46605	0.0	HOX1A_MAIZE; Homeobox protein HOX1A
TrEMBL	A0A0A9GE96	0.0	A0A0A9GE96_ARUDO; Hox1a
STRING	Pavir.Ca01677.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4393	37	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	6e-80	Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain

Publications ? help Back to Top
Bellmann R,Werr W Zmhox1a, the product of a novel maize homeobox gene, interacts with the Shrunken 26 bp feedback control element. EMBO J., 1992. 11(9): p. 3367-74 [PMID:1354614]