PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462888523 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | TALE | ||||||||
Protein Properties | Length: 241aa MW: 26687.5 Da PI: 11.5815 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.1 | 1.7e-09 | 182 | 219 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV++WF N R + 462888523 182 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 219 665559******************************98 PP | |||||||
2 | BELL | 35.9 | 1.9e-12 | 21 | 54 | 39 | 72 |
BELL 39 avaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +vag +++ Yt+lA+++iSrhFr+L+d i+ q+ 462888523 21 TVAGDRASAAYTALASRTISRHFRNLRDGIVAQL 54 79999**************************996 PP | |||||||
3 | BELL | 35.4 | 2.6e-12 | 81 | 114 | 39 | 72 |
BELL 39 avaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +vag +++ Yt+lA+++iSrhFr+L+d i+ q+ 462888523 81 TVAGDRASAAYTALASRTISRHFRNLRDGIVAQL 114 699999*************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07526 | 2.1E-8 | 21 | 50 | IPR006563 | POX domain |
Pfam | PF07526 | 1.5E-8 | 81 | 110 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.953 | 160 | 223 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.6E-9 | 163 | 227 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.25E-11 | 163 | 224 | No hit | No description |
SuperFamily | SSF46689 | 4.23E-18 | 164 | 232 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.9E-28 | 166 | 228 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.2E-18 | 180 | 219 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MAHDPSLGFA DYFSAADATA TVAGDRASAA YTALASRTIS RHFRNLRDGI VAQLQGVRKA 60 LGEKDVSMPG MTRGETPRLR TVAGDRASAA YTALASRTIS RHFRNLRDGI VAQLQGVRKA 120 LGEKDVSMPG MTRGETPRLR VLDQCIRQQK ALNQAGLMET HPWRPQRGLP ERAVTILRAW 180 LFEHFLHPYP SDVDKHILAR QTGLSRSQVS NWFINARVRL WKPMVEEMAS RTAAGSISSR 240 A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 3e-17 | 169 | 227 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 3e-17 | 169 | 227 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462888523 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU957962 | 1e-148 | EU957962.1 Zea mays clone 1638491 BEL1-related homeotic protein 14 mRNA, complete cds. | |||
GenBank | EU957980 | 1e-148 | EU957980.1 Zea mays clone 1639087 BEL1-related homeotic protein 14 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020184600.1 | 4e-88 | homeobox protein BEL1 homolog | ||||
Refseq | XP_020184605.1 | 4e-88 | homeobox protein BEL1 homolog | ||||
Refseq | XP_020184610.1 | 4e-88 | homeobox protein BEL1 homolog | ||||
Refseq | XP_020184619.1 | 4e-88 | homeobox protein BEL1 homolog | ||||
Swissprot | Q38897 | 4e-70 | BEL1_ARATH; Homeobox protein BEL1 homolog | ||||
TrEMBL | A0A0A9GPR1 | 6e-93 | A0A0A9GPR1_ARUDO; Uncharacterized protein | ||||
STRING | MLOC_62535.2 | 5e-89 | (Hordeum vulgare) | ||||
STRING | Traes_4BL_0F02B2343.1 | 2e-87 | (Triticum aestivum) | ||||
STRING | TRIUR3_26361-P1 | 3e-91 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3814 | 37 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41410.1 | 2e-72 | TALE family protein |
Publications ? help Back to Top | |||
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