PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462888511 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | HB-other | ||||||||
Protein Properties | Length: 218aa MW: 25359.9 Da PI: 8.2446 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 24 | 6.6e-08 | 168 | 201 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp+++++++L +++gL+ +q+ +WF N+R + 462888511 168 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 201 469*****************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01256 | 3.2E-13 | 2 | 54 | IPR005541 | KNOX2 |
Pfam | PF03791 | 4.1E-12 | 15 | 53 | IPR005541 | KNOX2 |
PROSITE profile | PS50071 | 11.726 | 142 | 205 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.8E-10 | 144 | 209 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.14E-16 | 144 | 208 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 5.19E-11 | 145 | 206 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-25 | 149 | 208 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 6.7E-18 | 162 | 201 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MPQQTPIPDA NRKAQYLMLL CSFREQLQQH VRVHAVEAVM ACREIEQSLQ DLTGATLEEG 60 TGATMSEDED EPPIMDGPMD MGSDAHDMMG FGPLLPTDSE RSLMERVRQE LKIELKQLIR 120 RSFPFSSLQG FKSRIEDVRE EILRKRRAGK LPGDTTSILK QWWQQHAKWP YPTEDDKAKL 180 VEETGLQLKQ INNWFINQRK RNWHNNSQTS TLKSKRKR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 5e-13 | 145 | 201 | 8 | 64 | Homeobox protein PKNOX1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 198 | 217 | RKRNWHNNSQTSTLKSKRKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462888511 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT069336 | 1e-119 | BT069336.2 Zea mays full-length cDNA clone ZM_BFc0110H11 mRNA, complete cds. | |||
GenBank | EU966907 | 1e-119 | EU966907.1 Zea mays clone 298091 homeobox protein HD1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002468611.2 | 1e-133 | homeobox protein knotted-1-like 3 | ||||
Swissprot | Q94LW3 | 1e-131 | KNOS3_ORYSJ; Homeobox protein knotted-1-like 3 | ||||
TrEMBL | A0A1B6QQV9 | 1e-132 | A0A1B6QQV9_SORBI; Uncharacterized protein | ||||
STRING | Si036727m | 1e-132 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP564 | 38 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62990.1 | 1e-104 | KNOTTED-like homeobox of Arabidopsis thaliana 7 |