PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462888232

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

NAC

Protein Properties

Length: 332aa MW: 37734.4 Da PI: 6.6265

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462888232	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.6	8.3e-56	7	136	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 +ppGfrFhPtdeelv++yL+kkv+++k++l +vik+vd+yk+ePwdL++ k+ e+++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk++++ k+ 462888232 7 VPPGFRFHPTDEELVDYYLRKKVASNKIDL-DVIKDVDLYKIEPWDLQEkcKIGMeEQNDWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKPIYT-KN 104 69**************************.9***********952433333556**********************************.99 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrle 129 lvg++ktLvfy+grap+g+k+dW+mheyrle 462888232 105 CLVGMRKTLVFYRGRAPNGQKSDWIMHEYRLE 136 9***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-61	5	156	IPR003441	NAC domain
PROSITE profile	PS51005	59.873	7	156	IPR003441	NAC domain
Pfam	PF02365	8.8E-29	8	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MDGSSHVPPG FRFHPTDEEL VDYYLRKKVA SNKIDLDVIK DVDLYKIEPW DLQEKCKIGM 60 EEQNDWYFFS HKDKKYPTGT RTNRATTAGF WKATGRDKPI YTKNCLVGMR KTLVFYRGRA 120 PNGQKSDWIM HEYRLETTEN GTAPEEGWVV CRVFKKRVAM VQRMADRSPC WFDDHHVAGF 180 MPALAHHPNA AYGGQQFYHC KPELEYHHLL PSQETFLPQL PQLESPKPPA AYIGHGSGSL 240 IQSSEEPSKC TAQQPTMDMA YMAAIDDSAT DWRALDKFVA SQLFSHGDGT PKEPSYSNPV 300 PAFHLTENNK REEALDYAST SASGGGEADM WK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-50	7	157	17	166	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-50	7	157	17	166	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-50	7	157	17	166	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-50	7	157	17	166	NO APICAL MERISTEM PROTEIN
4dul_A	4e-50	7	157	17	166	NAC domain-containing protein 19
4dul_B	4e-50	7	157	17	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462888232

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT075093	0.0	KT075093.1 Panicum virgatum secondary wall NAC master switch (SWN8B) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025825485.1	0.0	NAC domain-containing protein 7-like
Swissprot	Q9FWX2	1e-114	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	A0A2S3GRT7	0.0	A0A2S3GRT7_9POAL; Uncharacterized protein
STRING	Si017679m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2370	38	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-106	NAC 007

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]