PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462888082

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

HSF

Protein Properties

Length: 305aa MW: 34636.3 Da PI: 6.0057

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462888082	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	95.7	5e-30	1	88	9	103
HHCTGGGTTTSEES..SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 9 iledeelkelisws..engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkkse 103 ++ d++++ ++sw gn+fvv+d++e+a ++Lp++Fkh nfaSFvRQLn+YgF+kv+ ++ weF+h+sF +g+k+ll++ikr++ + 462888082 1 MVADPATDAVVSWGpgGAGNTFVVWDPRELAARLLPRFFKHANFASFVRQLNIYGFRKVNPDR---------WEFAHESFLAGQKHLLKNIKRRRPS 88 899*********55556*************************************999.........*******************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	1.2E-41	1	85	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	2.5E-26	1	85	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	1.25E-27	1	85	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	1.2E-30	1	85	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	1.1E-8	34	46	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	35	59	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.1E-8	47	59	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MVADPATDAV VSWGPGGAGN TFVVWDPREL AARLLPRFFK HANFASFVRQ LNIYGFRKVN 60 PDRWEFAHES FLAGQKHLLK NIKRRRPSKH QLESQSRTES RVCLGQPEDI REVQSLKRDR 120 ASLVAEVTML RQKYNRCKSV LLAMEERIRD NERKQQLIVA FFAKVLSNPE FVQRLLINRA 180 RNKELCGTVK RQRLMASEEQ LVDAPLKNGV EVASSAVKAA ISEGSSDDSV AGTDVKHETV 240 PEWNHQIINN ICDDVWEELD AIPGTGVDQE DIATDSFDVE ELTGRPCGWV DDCPFLVEPM 300 QFVEY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	2e-23	1	88	27	123	Heat shock factor protein 1
5hdg_A	2e-23	1	85	17	110	Heat shock factor protein 1
5hdn_A	2e-23	1	85	17	110	Heat shock factor protein 1
5hdn_B	2e-23	1	85	17	110	Heat shock factor protein 1
5hdn_C	2e-23	1	85	17	110	Heat shock factor protein 1
5hdn_D	2e-23	1	85	17	110	Heat shock factor protein 1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	78	84	LKNIKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462888082

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004982151.1	1e-143	heat stress transcription factor A-6a
Refseq	XP_025814071.1	1e-142	heat stress transcription factor A-6a-like
Swissprot	Q657C0	1e-139	HFA6B_ORYSJ; Heat stress transcription factor A-6a
TrEMBL	A0A2S3HUJ8	1e-140	A0A2S3HUJ8_9POAL; Uncharacterized protein
TrEMBL	K4ALG8	1e-141	K4ALG8_SETIT; Uncharacterized protein
STRING	Pavir.Eb02487.1.p	1e-146	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP308	37	231

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26150.1	6e-64	heat shock transcription factor A2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]