PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462887679 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | HSF | ||||||||
Protein Properties | Length: 154aa MW: 17237.9 Da PI: 8.5136 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 23.1 | 1.9e-07 | 8 | 35 | 2 | 29 |
HHHHHHHHHCTGGGTTTSEESSSSSEEE CS HSF_DNA-bind 2 Flkklyeiledeelkeliswsengnsfv 29 Fl+k+y ++ed++++++isw+++g++fv 462887679 8 FLTKTYAMVEDPSTDDTISWNDTGTAFV 35 9*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 5.7E-13 | 4 | 66 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 2.0E-7 | 4 | 35 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.58E-13 | 4 | 66 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.8E-4 | 8 | 35 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 4.4E-4 | 39 | 66 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MAAGTPPFLT KTYAMVEDPS TDDTISWNDT GTAFVGFKKV MADRWEFAND CFRRGEKHLL 60 GGIQRRKGTG GAAAAPGIPT AIPISSPXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 120 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXX |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462887679 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL663003 | 3e-38 | AL663003.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0032E06, complete sequence. | |||
GenBank | AP014960 | 3e-38 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY344483 | 3e-38 | AY344483.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF1 mRNA, complete cds. | |||
GenBank | CP012612 | 3e-38 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. | |||
GenBank | CR855149 | 3e-38 | CR855149.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0103M18, complete sequence. | |||
GenBank | CR855165 | 3e-38 | CR855165.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0139P06, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015691545.1 | 1e-41 | PREDICTED: heat stress transcription factor B-2a-like | ||||
Swissprot | Q7XRX3 | 5e-38 | HFB2A_ORYSJ; Heat stress transcription factor B-2a | ||||
TrEMBL | C5YE30 | 2e-39 | C5YE30_SORBI; Uncharacterized protein | ||||
TrEMBL | J3M0I0 | 3e-39 | J3M0I0_ORYBR; Uncharacterized protein | ||||
STRING | OB04G29050.1 | 6e-40 | (Oryza brachyantha) | ||||
STRING | Sb06g025710.1 | 4e-40 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP121 | 37 | 394 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11660.1 | 5e-21 | HSF family protein |
Publications ? help Back to Top | |||
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