PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462887616 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NAC | ||||||||
Protein Properties | Length: 390aa MW: 43301.5 Da PI: 4.6335 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 87.8 | 2e-27 | 55 | 197 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra..........tksg 81 p+G++F+P+d +l+ e+L+ k+ ++ e+i++v+ i++++P++Lp +k++ + ++fF++++k+y g+rk+r ++ 462887616 55 PAGVKFDPSDLQLL-EHLETKIGLGGsephmfID--EFIATVEndegICYSHPENLP-GMKKDGSVVHFFHTTSKAYGCGQRKRRRvitcsdhtvsDEHL 150 89************.99****8766656664433..33433322234**********.677888999******************658888887654477 PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128 +W+ tgk k+v++ +g ++g kk++v+yk r k+e++ Wvmh+y+l 462887616 151 RWHMTGKPKPVYD-NGVKKGWKKIMVLYKTlRGGKPERAPWVMHQYHL 197 8************.999***********776888999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.45E-34 | 39 | 216 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 27.482 | 54 | 216 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.4E-10 | 55 | 197 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
FWLTNGRGIA KKIRYAADCA NRQISELGAE AQRECPNCKH YIDNSDVAMQ WPGFPAGVKF 60 DPSDLQLLEH LETKIGLGGS EPHMFIDEFI ATVENDEGIC YSHPENLPGM KKDGSVVHFF 120 HTTSKAYGCG QRKRRRVITC SDHTVSDEHL RWHMTGKPKP VYDNGVKKGW KKIMVLYKTL 180 RGGKPERAPW VMHQYHLGED KDEKDGELVV SKIFYQSLAK HMENAETEAD DEEPDAFAAG 240 IGPKTPKTNT PQPRRANNSP CETEPNASIL LDQDEELTIP IAGDDDAGSL VWCAEEREQQ 300 AVGEASGAQA VGEPSLLCLE DPASLNDVTL LPMDYPILSQ CRNEMLDSNL NAFYGLADLS 360 NVDLGTPPDI QLSDIQFGSQ ESLGSWLDRI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 131 | 135 | RKRRR |
2 | 132 | 136 | KRRRV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462887616 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818203.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1-like isoform X1 | ||||
Swissprot | Q6NQK2 | 1e-77 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A3L6QEE7 | 0.0 | A0A3L6QEE7_PANMI; NAC domain-containing protein 73-like | ||||
STRING | Pavir.Aa01341.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2110 | 37 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01600.1 | 5e-77 | NAC domain containing protein 44 |