PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462887571 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NF-YB | ||||||||
Protein Properties | Length: 173aa MW: 19117.7 Da PI: 4.374 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 79.9 | 3.4e-25 | 22 | 110 | 7 | 95 |
NF-YB 7 flPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 + i+ ++rim +v+P n+ki d+ke + +cvsef + + ea + ++++ r ++gdd++ +l lGf dyv+pl+++l++yre +g 462887571 22 KISISILTRIMYHVMPLNTKINVDTKEAMSQCVSEFAAVLIREARQVAREDSRVIVSGDDIISSLDRLGFSDYVAPLSLFLRRYRESQG 110 5678899*******************************************************************************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 6.9E-24 | 21 | 113 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.31E-19 | 25 | 126 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.2E-7 | 28 | 85 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MEDSQAYDNI PEGTQAVEEI TKISISILTR IMYHVMPLNT KINVDTKEAM SQCVSEFAAV 60 LIREARQVAR EDSRVIVSGD DIISSLDRLG FSDYVAPLSL FLRRYRESQG IQQPPAVGSA 120 PVEIQQQPEL DLTLSLALPG PRDVTELELH EDVYKLWPGA AGRLMPPAGG DHT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 9e-18 | 25 | 107 | 15 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462887571 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A3L6S2Q0 | 1e-33 | A0A3L6S2Q0_PANMI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14056 | 13 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53340.1 | 1e-22 | nuclear factor Y, subunit B10 |