PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462887283 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | GRAS | ||||||||
Protein Properties | Length: 570aa MW: 64646.5 Da PI: 6.8257 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 303.5 | 5.2e-93 | 190 | 561 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 l++lL+ cA+av++g+++ a++lL++++++as +gd++qRla++f e+L+arla+++s++ k l + s + e l a+kl+ +s ++k++ + 462887283 190 LRTLLVLCAQAVATGNHASADELLKKIKQHASAKGDATQRLAQCFCEGLEARLAGTGSKVNKFLMDRCPS---VREFLEAYKLYMAASGFYKVALVFNIT 286 5789*********************************************************999999998...9************************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 +Il a+eg++r+Hi+ f+ GlQW++L+++La+R++gpp+++iT ++sp++ +e++eetg+rL++ A+++g+pf+f+ ++ ++e++ +e+L+++ 462887283 287 TILHAMEGKSRLHIVEFGTIFGLQWASLFRQLANREGGPPEVKITSIDSPQPRslPTERIEETGRRLSNCARNFGLPFKFHS-ITAAWEAVGIEDLNTNA 385 ***************************************************9999***************************.6999************* PP GRAS 199 gEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296 +E+l+Vn ++l +l+de+ +++ +++ vL+ ++++ P+v++ + +++ ++sFl+rf eal y +alfd+l+a++prese r ++E+ llgr + n 462887283 386 DEVLVVNDLFNLSTLMDERIFVDNpsPKEMVLNNIRKMCPDVFIQSIVNCSS-GTSFLTRFREALFYLTALFDMLDATIPRESESRLVLEQDLLGRCVLN 484 ******************987776559999**************99999998.789******************************************** PP GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 ++aceg++ e++++W+ r ++aG++++pl+ ++++ ++ + k++ + + + +++++l+ gW++r L++ S W 462887283 485 AIACEGEDLMDWPEKYRQWEVRNKRAGLRQLPLKPNIVQLVRDKVMKFHHKDFLLGKDDKWLIHGWMGRVLFAHSTW 561 *************************************************888************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 53.634 | 164 | 542 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.8E-90 | 190 | 561 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 570 aa Download sequence Send to blast |
MAITPEEFFV ESLMEQIPPS PSAFINLPQS HAGGGENQLT MDDSVLPHIS RVLMEDEIED 60 SILYSDHPAL LKVQRPFAQI LFSDSFRTNK YSTGPYASTP LLVTVRESIA HKVLKKRENR 120 DKHLEDEVGR ARKSTSYSRM KEMEEICELF DDLMLHSSEA CIRDMKKLRV AMDNVILKHA 180 SKATMDTVDL RTLLVLCAQA VATGNHASAD ELLKKIKQHA SAKGDATQRL AQCFCEGLEA 240 RLAGTGSKVN KFLMDRCPSV REFLEAYKLY MAASGFYKVA LVFNITTILH AMEGKSRLHI 300 VEFGTIFGLQ WASLFRQLAN REGGPPEVKI TSIDSPQPRS LPTERIEETG RRLSNCARNF 360 GLPFKFHSIT AAWEAVGIED LNTNADEVLV VNDLFNLSTL MDERIFVDNP SPKEMVLNNI 420 RKMCPDVFIQ SIVNCSSGTS FLTRFREALF YLTALFDMLD ATIPRESESR LVLEQDLLGR 480 CVLNAIACEG EDLMDWPEKY RQWEVRNKRA GLRQLPLKPN IVQLVRDKVM KFHHKDFLLG 540 KDDKWLIHGW MGRVLFAHST WVANDVPFSK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 5e-39 | 197 | 562 | 25 | 378 | Protein SCARECROW |
5b3h_D | 5e-39 | 197 | 562 | 25 | 378 | Protein SCARECROW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 212 | 217 | LKKIKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462887283 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025791279.1 | 0.0 | scarecrow-like protein 33 | ||||
TrEMBL | A0A2T8IAE3 | 0.0 | A0A2T8IAE3_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Hb00039.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP231 | 31 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-111 | GRAS family protein |