PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462887272 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | bHLH | ||||||||
Protein Properties | Length: 275aa MW: 29554.1 Da PI: 6.7217 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.1 | 8.8e-10 | 110 | 157 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++++P + sk Ka +L + ++Y++sLq 462887272 110 SHSLAERVRREKISERMKLLQDIVPGC----SKVTGKAVMLDEIINYVQSLQ 157 8*************************9....556*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.50E-11 | 104 | 161 | No hit | No description |
SuperFamily | SSF47459 | 6.41E-17 | 104 | 173 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.4E-17 | 106 | 174 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.523 | 106 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.9E-7 | 110 | 157 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-10 | 112 | 162 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MAHDGFTGAF HHELPWPLAH ASAAQFDALQ RRPPASGKSK AKDAVATATG KSPEAERRSK 60 KSKLSADAGA EDDDDLTPAG GDGKGKEVVV AEAPKDYIHV RARRGQATDS HSLAERVRRE 120 KISERMKLLQ DIVPGCSKVT GKAVMLDEII NYVQSLQRQV EFLSMKLSTV NPRLEVDVDS 180 LVQKDANQPC VPAASSLPPP VYSLEGSSSA FCYASSPAVQ SAVTTAKSFE TPSSFVSHGI 240 PDHSLQGFQN GNPQIGSLWE DDLQSLVQMG FRTNT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462887272 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT037022 | 2e-84 | BT037022.1 Zea mays full-length cDNA clone ZM_BFb0151M19 mRNA, complete cds. | |||
GenBank | BT063660 | 2e-84 | BT063660.1 Zea mays full-length cDNA clone ZM_BFc0091C03 mRNA, complete cds. | |||
GenBank | KJ726866 | 2e-84 | KJ726866.1 Zea mays clone pUT3407 bHLH transcription factor (bHLH141) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012703449.1 | 1e-115 | transcription factor bHLH62 | ||||
TrEMBL | K3ZII5 | 1e-113 | K3ZII5_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Ha00788.1.p | 1e-119 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13313 | 25 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07340.1 | 9e-58 | bHLH family protein |