PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462887027 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MYB | ||||||||
Protein Properties | Length: 324aa MW: 35192.4 Da PI: 4.8568 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.2 | 1.8e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +grWT+eEde+l++++k++G g+W++ ++ g+ R++k+c++rw +yl 462887027 14 KGRWTKEEDEILAKYIKEHGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 52.7 | 1e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ ++eE+e + ++++ lG++ W++Ia +++ gRt++++k++w+++l 462887027 67 RGNISEEEEEMIMKLHATLGNR-WSLIAGHLP-GRTDNEIKNYWNSHL 112 7899******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.012 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.77E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.6E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.41E-12 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.998 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-25 | 65 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.2E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.9E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MGRAPCCEKV GLKKGRWTKE EDEILAKYIK EHGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LRADLKRGNI SEEEEEMIMK LHATLGNRWS LIAGHLPGRT DNEIKNYWNS HLSRRASDFR 120 SGGDGVVVNV DLAKLPGGGK RRGGRAMAAK GGKAKKGKGK EKQVIAAEVA RQHETESQDT 180 NVSTPLSSQL CTAHSEEERA QASASGVTSD GLEDGPLGPS EEMVSELLCP KLEIGMGPDG 240 ACMDHDTDTG PCIKSEESGP GGPSGDVAPK EGEKALEDWD LTGLDISVDD DMWDSLVWDY 300 DGMVVPEGGQ QGELMPDLFF LDNL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-24 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462887027 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HF679411 | 1e-141 | HF679411.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB5 protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004967542.1 | 1e-133 | myb-related protein P | ||||
TrEMBL | A0A0A9JQV1 | 1e-143 | A0A0A9JQV1_ARUDO; Uncharacterized protein | ||||
STRING | Si002107m | 1e-132 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47460.1 | 2e-70 | myb domain protein 12 |