PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462887027
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 324aa    MW: 35192.4 Da    PI: 4.8568
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462887027genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.21.8e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +grWT+eEde+l++++k++G g+W++ ++  g+ R++k+c++rw +yl
        462887027 14 KGRWTKEEDEILAKYIKEHGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP

2Myb_DNA-binding52.71e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ ++eE+e + ++++ lG++ W++Ia +++ gRt++++k++w+++l
        462887027  67 RGNISEEEEEMIMKLHATLGNR-WSLIAGHLP-GRTDNEIKNYWNSHL 112
                      7899******************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-23564IPR009057Homeodomain-like
PROSITE profilePS5129418.012961IPR017930Myb domain
SuperFamilySSF466892.77E-2911108IPR009057Homeodomain-like
SMARTSM007178.6E-141363IPR001005SANT/Myb domain
PfamPF002491.7E-161461IPR001005SANT/Myb domain
CDDcd001674.41E-121661No hitNo description
PROSITE profilePS5129424.99862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.8E-2565115IPR009057Homeodomain-like
SMARTSM007176.2E-1666114IPR001005SANT/Myb domain
PfamPF002495.9E-1567112IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MGRAPCCEKV GLKKGRWTKE EDEILAKYIK EHGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRADLKRGNI SEEEEEMIMK LHATLGNRWS LIAGHLPGRT DNEIKNYWNS HLSRRASDFR  120
SGGDGVVVNV DLAKLPGGGK RRGGRAMAAK GGKAKKGKGK EKQVIAAEVA RQHETESQDT  180
NVSTPLSSQL CTAHSEEERA QASASGVTSD GLEDGPLGPS EEMVSELLCP KLEIGMGPDG  240
ACMDHDTDTG PCIKSEESGP GGPSGDVAPK EGEKALEDWD LTGLDISVDD DMWDSLVWDY  300
DGMVVPEGGQ QGELMPDLFF LDNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24121165108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462887027
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794111e-141HF679411.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB5 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967542.11e-133myb-related protein P
TrEMBLA0A0A9JQV11e-143A0A0A9JQV1_ARUDO; Uncharacterized protein
STRINGSi002107m1e-132(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.12e-70myb domain protein 12