PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462886737
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 496aa    MW: 55353 Da    PI: 8.5477
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462886737genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.73.2e-145195147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT++E++l+++  +++G   W++I +++g  +t+ q++s+ qk+
        462886737 51 REKWTEDEHKLFLESLQLHGRA-WRRIQEHIG-SKTAVQIRSHAQKF 95
                     789*****************88.*********.************98 PP
2Myb_DNA-binding44.73.2e-14109153147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT++E++l+++  +++G   W++I +++g  +t+ q++s+ qk+
        462886737 109 REKWTEDEHKLFLESLQLHGRA-WRRIQEHIG-SKTAVQIRSHAQKF 153
                      789*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.35E-1445101IPR009057Homeodomain-like
PROSITE profilePS5129417.78546100IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-84899IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-144998IPR006447Myb domain, plants
SMARTSM007178.4E-125098IPR001005SANT/Myb domain
PfamPF002493.0E-125194IPR001005SANT/Myb domain
CDDcd001676.95E-95396No hitNo description
SuperFamilySSF466892.24E-14103158IPR009057Homeodomain-like
PROSITE profilePS5129417.846104158IPR017930Myb domain
TIGRFAMsTIGR015572.3E-14107156IPR006447Myb domain, plants
SMARTSM007178.4E-12108156IPR001005SANT/Myb domain
PfamPF002493.0E-12109152IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-8109149IPR009057Homeodomain-like
CDDcd001676.95E-9111154No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MARFQEFEVM NDQRTAGGHV GHEDHLKNPL HLPAEERVPK ARKPYTISKQ REKWTEDEHK  60
LFLESLQLHG RAWRRIQEHI GSKTAVQIRS HAQKFFSKAR KPYTISKQRE KWTEDEHKLF  120
LESLQLHGRA WRRIQEHIGS KTAVQIRSHA QKFFSKVTRE SSGDGNNAAA PPRIRIPPPR  180
PKRKPTHPYP RKLGNAPSKD APVLNQLQVQ SFYEQENASP KSVLTVAQLG SETLAHDSGR  240
SPASSLDVEE RRPAPRVEVA AQLSPYKVAN SDAVSKHVKC AIPESAILTL FGKRVLVNDL  300
NQQPNLDTGN QQNAVDMELD ASAETPTSGA GKLSSNDAVE ANTWSPWLTD TKQFVYYLPQ  360
GEVFAVPSDC QFFSYYNGSI SCAVLSPKAN KQHQPSQAEA ADSILSSGEG SCTDSITTSS  420
SFPETLTQNS DSEESMQVNN RDDEVIPIPG SRKCVNPAPN CLRGFVPYKR CTAESKMLQS  480
PTPGEEADRE MTRLCL
Cis-element ? help Back to Top
SourceLink
PlantRegMap462886737
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824173.10.0uncharacterized protein LOC112899782
TrEMBLA0A2S3I9P71e-180A0A2S3I9P7_9POAL; Uncharacterized protein
STRINGPavir.Gb00859.1.p1e-176(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27223686
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.13e-32MYB_related family protein