PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462886298 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | ERF | ||||||||
Protein Properties | Length: 254aa MW: 27766.9 Da PI: 4.2743 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 27.4 | 8.5e-09 | 8 | 34 | 29 | 55 |
AP2 29 krfslgkfgtaeeAakaaiaarkkleg 55 r++lg+f ++eeAa+a++a +++++g 462886298 8 VRVWLGTFNSPEEAARAYDAEARRIRG 34 79**********************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.38E-18 | 1 | 44 | No hit | No description |
PROSITE profile | PS51032 | 13.999 | 1 | 42 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.4E-12 | 2 | 48 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-17 | 3 | 43 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-11 | 3 | 43 | IPR016177 | DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MGDPHKGVRV WLGTFNSPEE AARAYDAEAR RIRGKKAKVN FPDTLTGVQK RRAGLTVAKA 60 PKSSFEQKPT VKAALNNPIN TNGSFYPSAD YTSNKQVVQL DNMSFLPAMN PAAPIEDPIM 120 NLHSDQGSNS FSCSDLGWEN ETKTPDITSI TPDSTIAEGD ETEFVNNYSD GSLVPPVMEN 180 NTVDLTDELT DLEPYMRFLL DGGASESIDS LLNLDGSQDV VSDMDLWSFG DMPIFGIKTK 240 DWEIGKHLLG TLGQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462886298 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012698581.1 | 1e-122 | ethylene-responsive transcription factor 1 | ||||
Refseq | XP_022685012.1 | 1e-122 | ethylene-responsive transcription factor 1 | ||||
Swissprot | Q6K7E6 | 1e-110 | ERF1_ORYSJ; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | A0A1E5WBP2 | 1e-125 | A0A1E5WBP2_9POAL; Ethylene-responsive transcription factor 1 | ||||
STRING | Si017568m | 1e-122 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1039 | 38 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14230.2 | 9e-13 | related to AP2 2 |