PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462886253 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MYB | ||||||||
Protein Properties | Length: 169aa MW: 19766.5 Da PI: 10.8967 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.8 | 1.4e-14 | 4 | 53 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 r+rW +eEd l +v+q+G++ W++++++m+ + R +k+c +rw +yl 462886253 4 RQRWRPEEDAVLRAYVRQFGPREWHLVSQRMNvaLDRDAKSCLERWKNYL 53 89**********************************************97 PP | |||||||
2 | Myb_DNA-binding | 36.2 | 1.4e-11 | 59 | 100 | 1 | 44 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 +g+ T+eE+ l +++ +++G++ Wk+Ia++++ gRt+k + +w 462886253 59 KGSLTEEEQRLVIRLQAKHGNK-WKKIAAEVP-GRTAKRLGKWW 100 6788******************.*********.****9887666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.739 | 1 | 57 | IPR017930 | Myb domain |
SMART | SM00717 | 4.4E-11 | 3 | 55 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.5E-22 | 4 | 98 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.70E-7 | 6 | 53 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-20 | 6 | 60 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 3.7E-13 | 7 | 68 | No hit | No description |
SMART | SM00717 | 1.7E-8 | 58 | 106 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 16.982 | 58 | 108 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-16 | 61 | 102 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.95E-7 | 63 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MKERQRWRPE EDAVLRAYVR QFGPREWHLV SQRMNVALDR DAKSCLERWK NYLRPGIKKG 60 SLTEEEQRLV IRLQAKHGNK WKKIAAEVPG RTAKRLGKWW EAAAAERVER EYREKVAELR 120 RDAQAKEEKM AEQWAAKHAR VAKFLDQIAS SGGGHQRPRG PSWSSADIN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-16 | 7 | 108 | 7 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 2e-16 | 7 | 108 | 7 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 2e-16 | 7 | 108 | 7 | 105 | C-Myb DNA-Binding Domain |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for normal cell differentiation. Interacts directly with asymmetric leaves 2 (AS2) to repress the knox homeobox genes. {ECO:0000269|PubMed:10102816, ECO:0000269|PubMed:12750468, ECO:0000269|PubMed:9655808}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462886253 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF126489 | 1e-133 | AF126489.1 Zea mays rough sheath2 protein (rs2) gene, complete cds. | |||
GenBank | AF143447 | 1e-133 | AF143447.1 Zea mays rough sheath 2 (rs2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001105509.1 | 3e-65 | protein rough sheath 2 | ||||
Swissprot | Q9S7B2 | 2e-66 | RS2_MAIZE; Protein rough sheath 2 | ||||
TrEMBL | M0TX41 | 5e-65 | M0TX41_MUSAM; Uncharacterized protein | ||||
STRING | Pavir.Cb00486.1.p | 4e-66 | (Panicum virgatum) | ||||
STRING | GRMZM2G403620_P01 | 1e-64 | (Zea mays) | ||||
STRING | GSMUA_Achr9P03320_001 | 8e-66 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5190 | 36 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37630.1 | 1e-61 | MYB family protein |