PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462886118 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NAC | ||||||||
Protein Properties | Length: 170aa MW: 19322.2 Da PI: 9.5218 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 35.2 | 3.8e-11 | 1 | 27 | 102 | 128 |
NAM 102 lkktLvfykgrapkgektdWvmheyrl 128 ++ktLvfy+grapkg+k++Wvmhe+rl 462886118 1 MRKTLVFYRGRAPKGRKAEWVMHEFRL 27 89***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.32E-14 | 1 | 56 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 21.037 | 1 | 56 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MRKTLVFYRG RAPKGRKAEW VMHEFRLTAL ASRLQIPVMH QHGLKEDWVL CRVFYKSRTT 60 STRPPSEDQT GMPSSEPIQS AASSVATYNA FDDSQTVTKK VPCDFGLPAL SFRRPVSIED 120 LLTIDNSAHT MHIPYSRRPP LFQFQPSPLQ VPQLCLYSAP VNSILEQCKD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462886118 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002443999.1 | 6e-41 | NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A0A9DER2 | 3e-45 | A0A0A9DER2_ARUDO; Uncharacterized protein | ||||
STRING | Sb07g005610.1 | 2e-40 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12977.1 | 2e-21 | NAC family protein |