PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462886051
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 234aa    MW: 24708.6 Da    PI: 7.3074
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462886051genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.12.6e-101446134
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkg 34
                     +g+WT+eEd++l+ +++q G g+W++ +++ g +
        462886051 14 KGPWTPEEDQKLLAYIEQNGHGCWRSLPAKAG-T 46
                     79**************************9999.4 PP

2Myb_DNA-binding26.71.3e-0866912148
                     TT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 21 ggtWktIartmgkgRtlkqcksrwqkyl 48
                     + +W++Ia ++  +Rt++++k++w+++l
        462886051 66 N-RWSAIATHLS-KRTDNEIKNYWNTHL 91
                     3.5*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-12543IPR009057Homeodomain-like
PROSITE profilePS5129415.037995IPR017930Myb domain
SuperFamilySSF466897.19E-131187IPR009057Homeodomain-like
SMARTSM007171.5E-151393IPR001005SANT/Myb domain
CDDcd001677.54E-121691No hitNo description
PfamPF139215.4E-91796No hitNo description
Gene3DG3DSA:1.10.10.607.2E-2065102IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MGRSPCCEKE GLKKGPWTPE EDQKLLAYIE QNGHGCWRSL PAKAGTLLMR VLFTVGAENF  60
ALCCHNRWSA IATHLSKRTD NEIKNYWNTH LKKRLAKMGI DPVTHKPRSD ALSAGAGAGA  120
AGSAQHAKAA AHLSHTAHFS DGAATLASVL EAARGGGGRS ASTALASVLE AAHAAAMQPV  180
QAADADAGSQ QQQQQETEEE KNYWDSILNL VNTSSSASAV VPPAPEAYSP APEF
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462886051
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3603781e-60AK360378.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1116O14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975862.18e-71transcription factor MYB16
RefseqXP_015691484.15e-72PREDICTED: transcription factor MYB32-like
SwissprotQ9LE632e-53MY106_ARATH; Transcription factor MYB106
TrEMBLI1PLX91e-69I1PLX9_ORYGL; Uncharacterized protein
TrEMBLK3Y8112e-69K3Y811_SETIT; Uncharacterized protein
STRINGORGLA04G0119800.12e-70(Oryza glaberrima)
STRINGSi010352m3e-70(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.19e-51myb domain protein 16