PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462886051 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MYB | ||||||||
Protein Properties | Length: 234aa MW: 24708.6 Da PI: 7.3074 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.1 | 2.6e-10 | 14 | 46 | 1 | 34 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkg 34 +g+WT+eEd++l+ +++q G g+W++ +++ g + 462886051 14 KGPWTPEEDQKLLAYIEQNGHGCWRSLPAKAG-T 46 79**************************9999.4 PP | |||||||
2 | Myb_DNA-binding | 26.7 | 1.3e-08 | 66 | 91 | 21 | 48 |
TT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 21 ggtWktIartmgkgRtlkqcksrwqkyl 48 + +W++Ia ++ +Rt++++k++w+++l 462886051 66 N-RWSAIATHLS-KRTDNEIKNYWNTHL 91 3.5*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-12 | 5 | 43 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.037 | 9 | 95 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.19E-13 | 11 | 87 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-15 | 13 | 93 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.54E-12 | 16 | 91 | No hit | No description |
Pfam | PF13921 | 5.4E-9 | 17 | 96 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.2E-20 | 65 | 102 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MGRSPCCEKE GLKKGPWTPE EDQKLLAYIE QNGHGCWRSL PAKAGTLLMR VLFTVGAENF 60 ALCCHNRWSA IATHLSKRTD NEIKNYWNTH LKKRLAKMGI DPVTHKPRSD ALSAGAGAGA 120 AGSAQHAKAA AHLSHTAHFS DGAATLASVL EAARGGGGRS ASTALASVLE AAHAAAMQPV 180 QAADADAGSQ QQQQQETEEE KNYWDSILNL VNTSSSASAV VPPAPEAYSP APEF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Functions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462886051 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK360378 | 1e-60 | AK360378.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1116O14. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004975862.1 | 8e-71 | transcription factor MYB16 | ||||
Refseq | XP_015691484.1 | 5e-72 | PREDICTED: transcription factor MYB32-like | ||||
Swissprot | Q9LE63 | 2e-53 | MY106_ARATH; Transcription factor MYB106 | ||||
TrEMBL | I1PLX9 | 1e-69 | I1PLX9_ORYGL; Uncharacterized protein | ||||
TrEMBL | K3Y811 | 2e-69 | K3Y811_SETIT; Uncharacterized protein | ||||
STRING | ORGLA04G0119800.1 | 2e-70 | (Oryza glaberrima) | ||||
STRING | Si010352m | 3e-70 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15310.1 | 9e-51 | myb domain protein 16 |