PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462885859
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 715aa    MW: 78733.5 Da    PI: 5.2152
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462885859genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.62.9e-08556597144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      r +W++ E +l++++ +q+G++ ++ I + ++  +t+ +++ ++
        462885859 556 RSKWSKSETDLFYQGLRQFGSD-FAMIQQLFP-DKTRDHVRQKF 597
                      789*******************.*********.********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.43E-10546603IPR009057Homeodomain-like
PfamPF159633.2E-25549630No hitNo description
SMARTSM007172.1E-6555603IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-4556598IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MAVGHGRSWA AVLGRTFETT TVAQMIDNEV DFGNILDDAE EAQPAPKLSL KPRVKPRRAS  60
LQSKSSAPTP AAKIKDGKAG AISQGNSSEE HSNSQGRASV ACPVSVTVDD IAGSKGSPDT  120
PFEDVLTVPL GPLSNCGLVS GSAAGGSSAA GSVSQDDEHA NDSSKIGTHH ESLAVSDIHA  180
APASSCGKTI DDMVDFGETF DAQAKEETVS KLQPRVQVKL PKLAVKSQKK KVAASTIGVV  240
IQNERSDTNQ MGVKDDHIQA PRCHESGGQT SDSETLMGAE PKGKGKSVSF SLPDASDGVA  300
PRDTNSEMDD FSRFCNEFYN SPQQTTQKES TESASQYPEE EPSDQAVEQQ PKSHVGEMGS  360
SMKLRSRKKL QKVGISQETA ADYDEDFVEP SAPEHDNSVD YTAGSKRKIR RKSRGGVEEP  420
QQQDVQNDGS QVPSRGRKKT SKDAPTEKTE KKLTHRIRQK RMKEVKTLLE KPYDEIDHKK  480
LSAAHLRLLQ EARERINGKE TLSGPSSNAS SQHENPDDFD YNRYDETENF DEDRTETNVE  540
NVTKLNYHSY MNRKTRSKWS KSETDLFYQG LRQFGSDFAM IQQLFPDKTR DHVRQKFKAE  600
EKKNPMLIHD AIIHRSGDNL YFKKVIKQLK IDDVVPDISS TRKQDNASNE GGPANENASD  660
DFINEEENSS NQMDTEQDMH MSDVQEEEHA PGNSDDDLGD IFDCKRIPAQ CLLLL
Cis-element ? help Back to Top
SourceLink
PlantRegMap462885859
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012698058.11e-165uncharacterized protein LOC101786485 isoform X2
TrEMBLA0A2T7F5N80.0A0A2T7F5N8_9POAL; Uncharacterized protein
STRINGPavir.Aa02686.1.p1e-161(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25952946
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.11e-33MYB_related family protein