PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462885723
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ARF
Protein Properties Length: 876aa    MW: 96216.4 Da    PI: 7.1262
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462885723genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.41.3e-23173274199
                EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                f+k+lt sd++++g +++ +++a+e+      + + + +++l+ +d++g +W++++i+r++++r++l++GW+ Fv+a++L +gD ++F   + +++el+v
  462885723 173 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHGAEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFL--RGDNGELRV 269
                99*****************************7333.34459************************************************..3489999** PP

                EEE-S CS
         B3  95 kvfrk 99 
                +v+r+
  462885723 270 GVRRA 274
                **996 PP
2Auxin_resp1125.7e-37299381183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha++t+++F+v+Y+Pr+s++eFvv+++++ ++lk+++s+GmRfkm+fe+e+++e+r++Gt+vg++d d+  Wp+SkWrsLk
   462885723 299 AWHAVNTGTMFTVYYKPRTSPAEFVVPCDRYIESLKQNYSIGMRFKMRFEGEEAPEQRFTGTIVGMEDPDSGGWPKSKWRSLK 381
                 89*******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.4E-42167288IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-40167302IPR015300DNA-binding pseudobarrel domain
CDDcd100171.50E-21171273No hitNo description
SMARTSM010191.6E-23173275IPR003340B3 DNA binding domain
PROSITE profilePS5086311.914173275IPR003340B3 DNA binding domain
PfamPF023621.7E-21173274IPR003340B3 DNA binding domain
PfamPF065079.1E-35299381IPR010525Auxin response factor
PfamPF023098.0E-12746832IPR033389AUX/IAA domain
PROSITE profilePS5174521.281748832IPR000270PB1 domain
SuperFamilySSF542772.16E-11752824No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 876 aa     Download sequence    Send to blast
MAPRRRWDEV PEELRQRMGG ARAMSASAAA AAAQAAGGGG VEGDGSAAAV GRGGGGAPPE  60
DGMYTELWNL CAGPLVTVPK VGDKVYYFPQ GHIEQVEAST NQVAEQHMQL YNLPWKIPCE  120
VMNVELKAEP DTDEVYAQLT LLPESKQEEN ASSVKEMPAV PSAALARPRV HSFCKTLTAS  180
DTSTHGGFSV LRRHADECLP PLDMSRQPPT QELVAKDLHG AEWRFRHIFR GQPRRHLLQS  240
GWSVFVSAKR LVAGDAFIFL RGDNGELRVG VRRAMRQQAN VPSSVISSHS MHLGVLATAW  300
HAVNTGTMFT VYYKPRTSPA EFVVPCDRYI ESLKQNYSIG MRFKMRFEGE EAPEQRFTGT  360
IVGMEDPDSG GWPKSKWRSL KVRWDEASSI PRPERVSPWQ IEPAVSPPPI NPLPVPRTKR  420
PRPNVLSSPP DSSVPTKGAA AKVTAETQHN ALQRAFPTQE NATPKGGFVD NEIETAHKSV  480
LLPPGLDRDK NAICAPRKLG SDGWVQTNIP GSYNEMMSGY QPPKDVQNSQ GFCPLPEQIA  540
PGLSNFWHTV NAHYQDQQGN HNMFPGSWSM LPPGSGFGLN KQNYPMMQEV GGFPQRSTHP  600
KFGNGAFTAV SGSGIDQHSP GWFGHMKPGA DLEDPQPRVI KPRPLIIGHA DGQKSKGNSC  660
KLFGIHLDSP AKSEPLKSPS SVGYDGMPQT PVAAEWRRSD TSEIDKCSDP PKTPKQLDNP  720
KADSVSEKHP ACPQISRSVQ CRSQGETRSC KKVHKQGIAL GRSVDLTKFS DYKELISELD  780
EMFDFNGELK SSNKEWMVVY TDNEGDMMLV GDDPWNEFCN MVHKIFIYTR EEVQRMNPGT  840
LNSKSEDSPS DSMEMGSVAK EVQGCLSTTS LNSGNC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-172534039354Auxin response factor 1
4ldw_A1e-172534039354Auxin response factor 1
4ldw_B1e-172534039354Auxin response factor 1
4ldx_A1e-172534039354Auxin response factor 1
4ldx_B1e-172534039354Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1418422KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMap462885723
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684734.10.0auxin response factor 23 isoform X2
SwissprotA2ZET60.0ARFW_ORYSI; Auxin response factor 23
TrEMBLK3ZHD70.0K3ZHD7_SETIT; Auxin response factor
STRINGSi025988m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117836111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2