PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462885661 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | S1Fa-like | ||||||||
Protein Properties | Length: 126aa MW: 14186.7 Da PI: 11.1029 | ||||||||
Description | S1Fa-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | S1FA | 134 | 3.7e-42 | 57 | 126 | 2 | 70 |
S1FA 2 avakvea.kGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 +v+++e+ kGlnPG+ivllvv+++ll+f+vgny+lyvyaqk+lPP+kkkPvskkklkreklkqGv++PGe 462885661 57 NVVIEEVnKGLNPGMIVLLVVASFLLLFFVGNYALYVYAQKTLPPKKKKPVSKKKLKREKLKQGVSAPGE 126 56778888*************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD019013 | 9.0E-9 | 58 | 126 | No hit | No description |
Pfam | PF04689 | 5.9E-39 | 62 | 126 | IPR006779 | DNA binding protein S1FA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence Send to blast |
SHSWYINRKR KEKRKVRVEI RRKPQAGSRL PSSEKRAVFG SDQATAMAEQ FADSASNVVI 60 EEVNKGLNPG MIVLLVVASF LLLFFVGNYA LYVYAQKTLP PKKKKPVSKK KLKREKLKQG 120 VSAPGE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 6 | 13 | NRKRKEKR |
2 | 7 | 12 | RKRKEK |
3 | 8 | 22 | KRKEKRKVRVEIRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462885661 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP091981 | 1e-86 | FP091981.1 Phyllostachys edulis cDNA clone: bbasst002p11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633609.1 | 1e-32 | DNA-binding protein S1FA2 | ||||
Swissprot | Q7XLX6 | 9e-34 | S1FA2_ORYSJ; DNA-binding protein S1FA2 | ||||
TrEMBL | A0A0D3FVJ5 | 3e-32 | A0A0D3FVJ5_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0D9ZKE5 | 2e-32 | A0A0D9ZKE5_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0H0D2 | 2e-32 | A0A0E0H0D2_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0P8S3 | 2e-32 | A0A0E0P8S3_ORYRU; Uncharacterized protein | ||||
STRING | OGLUM04G11330.1 | 3e-33 | (Oryza glumipatula) | ||||
STRING | ORUFI04G12840.1 | 3e-33 | (Oryza rufipogon) | ||||
STRING | ONIVA04G09610.1 | 3e-33 | (Oryza nivara) | ||||
STRING | OBART04G11650.1 | 6e-33 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5154 | 35 | 63 |
Publications ? help Back to Top | |||
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